LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g01319	ATGGGTTGCGTTTGTGGCAAGTTTTCTCCCCCTCGAGAAGAGAGGCCGAGACCACCGCAAGTGAAGAGAGTTGCAAGCAAAGAGGGTTCGAGAACTACGCGTTCCTCTAAGCATGTGGGAGAGGGTGTGAAGAGGGAGACTCAGAGACAGAGAGTGAGTGTGAGTGTTAATAAGGATTCAACTGCTAATGATGGTGGTGTTGTAGAAGGAGAAAAGGGAAAAACGGTTGCTAAAAAGGGCAAGACTACTAAGGATTTGGATGTTAAGGAGGAGAAGATGGCCGAATATGGATTTGTGGACGGGTGGCCAAAGTGGTTGCTCGATAATATCCCCGCAAATGTTTTGGCTAAAATTGTTCCAAAGAGCGCTGATTCCTTTGAAAAACTTGCCAAGataggacgtggaacatatagtaatgtgtacaaagcaagagaaaagggcacgggaaagattgttgctttgaagaaggtaaggtttgacacgtcggattctgagagtatcaagtttatggcaagagagatcatgatactgcagatgctggatcatcccaatgtgatcaaacttaaaggactggcaacatcaaggatgcagtatagtctttatctagtttttgacttcatgcagtctgatctcacccgcattatctcccgacccggggagaaactcaccgaagcacagatcaagtgttatatgcagcagctcctttctggcctgcagcactgtcatgagacgggaatcatgcaccgagatatcaaggcttctaacttattaatagacagaagaggagtgctgaaaattgcagattttggacttgcaacttccattgaagctgaaaggccactaacaaatagagtggtgacactttggtatagggctccagaacttcttttgggttcaaccgattatggattcagcattgatctctggagtgcagggtgcctgttggctgagatgcttgttggaagacctattatgcctggcaggacagaggttgaacagattcatatgatcttcaaactttgtggttctccttcagaggattattttaaaaaaCTGAAGCTAAGAACAAGTTATCGGCCTCCAAACCATTACAAACTAAGTTTCAAAGAAAACTTTCAGAATTTTCCTTCCTCTTCCCAGGGTCTCTTGGCTACATTTCTTGATCTCAATCCTGCCCATCGTGGCAGTGCTGCCTCTGCTCTCCAAAGTGAATTCTTCAAATGTAGTCCTTTAGCATGTGACCCTTCAGCTTTGCCAGATATCCCCAAAGACGAGGATGAACGCTTGCAAACTAAGAGAGGCAAAAGGCAAAGGGTTTCCAAAAGGGGGCAATCATCTCAAACAAGTAGAAGTGATGCTAGTCAGTCAGAAAAGGTCCAAATTACTGCTGAACAACCCCGTGAAGATACAGAATCGTCTAAAGAGAAGAATATGGAACAACACAAGCAGGGTCAAGAAACTGGTCATAGTGCTAGCAGCACATCATCCGGTTCAAGACTCTTTATGACCGAAGGGAGCACGAATGCATCTATGTCCCCAGTTTTTCTCTCTAGTGGCAGTGTCAGAAAATCCCCCAAAATAGAGGGCCACCCTAATGCTCTTAGGAACATAGAGAACTATAGTGCTCTCTTACAACAGACTTCTGTACTTGATATGATCAACCGCAATGAAGGCAAGGAATTTCCTCAGCTTCTCAAATCATTCTCCGCGTTGGATTTTCGACTTGATTCTGACAAGCTATCATAA	1746	0.2784	MGCVCGKFSPPREERPRPPQVKRVASKEGSRTTRSSKHVGEGVKRETQRQRVSVSVNKDSTANDGGVVEGEKGKTVAKKGKTTKDLDVKEEKMAEYGFVDGWPKWLLDNIPANVLAKIVPKSADSFEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMILQMLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGEKLTEAQIKCYMQQLLSGLQHCHETGIMHRDIKASNLLIDRRGVLKIADFGLATSIEAERPLTNRVVTLWYRAPELLLGSTDYGFSIDLWSAGCLLAEMLVGRPIMPGRTEVEQIHMIFKLCGSPSEDYFKKLKLRTSYRPPNHYKLSFKENFQNFPSSSQGLLATFLDLNPAHRGSAASALQSEFFKCSPLACDPSALPDIPKDEDERLQTKRGKRQRVSKRGQSSQTSRSDASQSEKVQITAEQPREDTESSKEKNMEQHKQGQETGHSASSTSSGSRLFMTEGSTNASMSPVFLSSGSVRKSPKIEGHPNALRNIENYSALLQQTSVLDMINRNEGKEFPQLLKSFSALDFRLDSDKLS	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	441	461	-	-
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	462	483	-	-
	Gma06g01319	581	SMART	serkin_6	126	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g01319	581	Gene3D	Transferase(Phosphotransferase) domain 1	209	452	-	-
	Gma06g01319	581	Pfam	Protein kinase domain	126	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g01319	581	SUPERFAMILY	Protein kinase-like (PK-like)	119	409	IPR011009	-
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	10	52	-	-
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	484	511	-	-
	Gma06g01319	581	ProSitePatterns	Protein kinases ATP-binding region signature.	132	155	IPR017441	GO:0005524
	Gma06g01319	581	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	416	511	-	-
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	1	73	-	-
	Gma06g01319	581	CDD	STKc_CDK9_like	126	406	-	-
	Gma06g01319	581	ProSiteProfiles	Protein kinase domain profile.	126	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g01319	581	MobiDBLite	consensus disorder prediction	419	433	-	-
	Gma06g01319	581	PANTHER	CYCLIN-DEPENDENT KINASE	72	529	-	-
	Gma06g01319	581	Gene3D	Phosphorylase Kinase; domain 1	114	208	-	-
	Gma06g01319	581	PANTHER	CELL DIVISION PROTEIN KINASE	72	529	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g01319	Gma-Chr6	12403130	12408974	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g01319	121	460	Core Cell Cycle Gene Families	AT5G10270	45.278	3.07e-97	304

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Gma06g01319		Pkinase	1e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g01319	K08819		-	gmx:100782603	961.444