Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01310 ATGGACTTGGCCGCGAAGCTTCACCGTTTAGACCTCACCGGCGTGGTCATTTTGGACGCACGAAAGCCCTCCGTACTCCGCCACCTTCCGCCACGCATCCTCACCAAAACAAACACCAATTTAATCTACACGAACCGGTTCTCGGGCCCACCGAGGCCCAATTCCGCTTCCTCTTCCACGATAACCGTTGAGGACGACATCGAGTCTCTCTTCTCCGAGACGAATTCGGAGGAGGAGAGGCGCTCGAGGAAGCAACCGAGCAGTGGCGCGTCGGGGATTTCCTCTGGAGTGAAGCTCGAGAACGTGGGGAAAGCCTACAAGGGCGTGACGGTGCTGAAGGACGTGAGTTGGGAGGTGAAGAAAGGGGAGAAGGTGGGTTTAGTCGGCGTGAACGGTGCGGGGAAGACGACGCAGATGAGGATAATCGCGGGGCTCGAGGAGCCGGATTTCGGGAACGTGGTGAAGGCAAAGGAGAACATGAGAATCGCGTTTCTGAACCAGGAGTTCGAGGTAGCGCTGAGCAGGACTGTGAGGGAGGAGTTCACCAGCGCATTCAAGGAGGAGATGGAGGTGGCAGGGAAGCTGGAGAAGGTGCAGAAGGCGCTCGAGGGTGCTGTTAATGATTTGGAGCTCATGGGGAGGCTTTTGGATGAGTTCGATTTGCTTCAGAGGAGGGCGCAGAATGTGAACCTTGATGAGGTTGATGCCAAGATTAGTAAGTTGATGCCTGAGCTTGGTTTTGCTCCGGAGGATTCTGATAGATTGGTCGCGTCTTTCAGTGGAGGGTGGCAGATGAGGATGTGTCTCGGCAAGATTCTACTTCAGGAGCCCGATTTGTTGCTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAGGACTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGATCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACGTTTGAGGGAAATTATTCTCAGTATGTAATTTCAAAAGCAGCTTGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTGGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAGCAATTCAGAACTTGGAATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTCGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAAACCGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTCCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAGATGTTCGAGTGGTTATTGCTTGAGTAA 1671 0.4895 MDLAAKLHRLDLTGVVILDARKPSVLRHLPPRILTKTNTNLIYTNRFSGPPRPNSASSSTITVEDDIESLFSETNSEEERRSRKQPSSGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKENMRIAFLNQEFEVALSRTVREEFTSAFKEEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAIQNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKMFEWLLLE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01310 556 CDD ABCF_EF-3 97 327 - -
Gma06g01310 556 Gene3D - 94 378 IPR027417 -
Gma06g01310 556 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 97 355 IPR003439 GO:0005524
Gma06g01310 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 345 IPR027417 -
Gma06g01310 556 Pfam ABC transporter 326 413 IPR032781 -
Gma06g01310 556 SMART AAA_5 448 546 IPR003593 -
Gma06g01310 556 SMART AAA_5 121 336 IPR003593 -
Gma06g01310 556 ProSitePatterns ABC transporters family signature. 259 273 IPR017871 GO:0005524
Gma06g01310 556 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 55 550 - -
Gma06g01310 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 549 IPR027417 -
Gma06g01310 556 MobiDBLite consensus disorder prediction 44 63 - -
Gma06g01310 556 MobiDBLite consensus disorder prediction 71 95 - -
Gma06g01310 556 Gene3D - 386 550 IPR027417 -
Gma06g01310 556 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 55 550 - -
Gma06g01310 556 Pfam ABC transporter 112 287 IPR003439 GO:0005524
Gma06g01310 556 Pfam ABC transporter 440 549 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01310 Gma-Chr6 12297299 12301083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01310 421 482 Calmodulin-binding Proteins AT2G36910 30.769 3.91e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01310 - - gmx:100797121 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02103 04 51513246 51518524 Gma06g01310 06 12297299 12301083 GST