Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01271 ATGCGAGTGCTATTTTCAAGCATGAGAGTTTTTCTTCTTCTTGTGTGGTTGTTGGAGCTGGTTTGTGTTTCGGTGACCGCCGTGAACCCTTCTCTGAACGACGACGTTTTGGGGCTTATAGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTCGCTTCTTGGAACGAGGACGATGAGAGCGCGTGTGGTGGTAGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAATAGAGTGGTGGAGGTTAACCTTGATGGGTTCTCGCTCTCTGGGAGAATAGGTAGAGGGTTGCAAAGGTTGCAGTTTCTAAGAAAGCTTTCACTGGCGAATAATAACCTCACTGGTGGGATAAACCCCAACATTGCTCGGATTGATAACCTTAGGGTCATTGACTTGAGTGGGAATAGTCTCTCAGGGGAGGTTTCTGATGATGTTTTCCGACAATGTGGGTCTCTCAGGACTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGAGCATTCCCTCTACTTTGGGGGCATGTTCTGCTCTTGCTTCTATCGACCTTTCTAATAACCAGTTTTCTGGTTCTGTTCCCTCCGGGGTTTGGTCCTTGAGTGCTCTCAGGTCTCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAGGGGGTTGAGGCGATGAAGAATTTGAGGAGTGTTAGTATGACGAGGAATCGGTTGACCGGGAATGTTCCTTTTGGGTTTGGGAGTTGTTTGCTATTGAGGTCTATTGATTTAGGGGATAATTCTTTTTCTGGGAGTATTCCTGGTGATCTTAAGGAACTTACATTGTGTGGTTATCTTAGCTTGCGTGGGAATGCTTTCTCGAGGGAGGTTCCTGAGTGGATTGGGGAGATGAGAGGGCTTGAGACGTTGGACCTTTCGAACAATGGGTTTACCGGTCAGGTGCCGAGCTCTATTGGAAATCTTCAGTTGCTGAAGATGTTAAATTTTTCTGGAAATGGTCTCACTGGTAGTCTGCCGGAGTCTATTGTGAATTGCACAAAACTTTCGGTGTTGGATGTCAGCCGGAATTCGATGTCCGGGTGGCTTCCGTTGTGGGTTTTCAAGTCAGATTTGGACAAGGGTTTGATGTCAGAAAATGTACAGAGTGGGAGCAAGAAAAGCCCTTTGTTTGCCTTGGCTGAAGTCGCGTTTCAAAGTCTTCAGGTTTTGGATTTGTCTCACAATGCGTTTTCTGGCGAAATCACATCTGCAGTTGGAGGTTTAAGCAGCTTGCAGGTTTTGAATTTAGCAAACAACTCTCTCGGAGGTCCTATTCCAGCTGCCATTGGTGAATTGAAAACATGTTCAAGTCTTGATTTGAGCTATAATAAGCTGAATGGAAGCATACCTTGGGAAATAGGAAGAGCTGTGTCCTTGAAAGAACTGGTATTGGAAAAGAACTTCCTAAATGGGAAAATTCCATCGTCAATTGAGAACTGCTCTTTGCTAACAACTTTGATTCTGTCCCAGAACAAGCTGAGTGGTCCAATACCTGCAGCAGTTGCAAAACTTACTAACCTGCGAACTGTGGATGTATCGTTTAACAGTCTCACTGGAAACCTTCCTAAGCAATTGGCCAACCTTGCCAATCTTCTTACCTTCAATTTATCTCACAACAACCTTCAGGGTGAGCTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCCAACACCTCTACTGACACTGGTCCGGGTTCATTGCCTCCAAATTTGGGTCATAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGCTCCTCTACACCTCGTGATGCAGCTGCCCTCACATTTTCTGCAGGGGACGAATTCAGCCGTTCCCCGACTACAGATGCTAACTCTGGCAAGCTTGTCATGTTTTCGGGTGAGCCTGATTTCAGTTCTGGTGCGCATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGATTTGGAGCAGTGTACCAAACTGTTCTTAGAGATGGACATTCAGTTGCTATAAAGAAGCTCACTGTGTCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAATCAGACACCAAAACCTCGTGGAACTCGAGGGTTATTATTGGACTACATCGCTGCAGCTGCTCATATACGAGTATGTCTCCGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGGAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTCGGAACAGCGAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTCTTGATAGTTACGGTGAACCAAAAGTAGGGGACTTTGGCCTAGCAAGACTGTTGCCAATGCTTGATCGATACGTTTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCGCCAGAGTTTGCCTGCAAGACGGTGAAAATCACCGAGAAATGCGATGTATATGGGTTTGGTGTCTTGGTCTTGGAGATCGTCACAGGGAAGAGGCCAGTCGAATACATGGAGGATGATGTGGTGGTACTATGCGACATGGTGAGAGGGGCTTTGGAAGAAGGCAGGGTGGAGGAGTGCATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCTATTCCTGTCATGAAACTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCGGAAGGACAAGAAGAATTGGCATGA 2937 0.461 MRVLFSSMRVFLLLVWLLELVCVSVTAVNPSLNDDVLGLIVFKADIRDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSDDVFRQCGSLRTVSLARNRFSGSIPSTLGACSALASIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRSVSMTRNRLTGNVPFGFGSCLLLRSIDLGDNSFSGSIPGDLKELTLCGYLSLRGNAFSREVPEWIGEMRGLETLDLSNNGFTGQVPSSIGNLQLLKMLNFSGNGLTGSLPESIVNCTKLSVLDVSRNSMSGWLPLWVFKSDLDKGLMSENVQSGSKKSPLFALAEVAFQSLQVLDLSHNAFSGEITSAVGGLSSLQVLNLANNSLGGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGRAVSLKELVLEKNFLNGKIPSSIENCSLLTTLILSQNKLSGPIPAAVAKLTNLRTVDVSFNSLTGNLPKQLANLANLLTFNLSHNNLQGELPAGGFFNTISPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDTGPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTPRDAAALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTTSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELA 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01271 978 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Gma06g01271 978 SUPERFAMILY L domain-like 60 360 - -
Gma06g01271 978 SUPERFAMILY RNI-like 275 556 - -
Gma06g01271 978 Gene3D Phosphorylase Kinase; domain 1 689 771 - -
Gma06g01271 978 Gene3D Transferase(Phosphotransferase) domain 1 772 976 - -
Gma06g01271 978 Gene3D Ribonuclease Inhibitor 33 310 IPR032675 -
Gma06g01271 978 SUPERFAMILY Protein kinase-like (PK-like) 698 970 IPR011009 -
Gma06g01271 978 Gene3D Ribonuclease Inhibitor 311 588 IPR032675 -
Gma06g01271 978 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Gma06g01271 978 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Gma06g01271 978 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Gma06g01271 978 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Gma06g01271 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 11 976 - -
Gma06g01271 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 976 - -
Gma06g01271 978 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Gma06g01271 978 ProSiteProfiles Protein kinase domain profile. 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01271 978 CDD STKc_IRAK 701 967 - -
Gma06g01271 978 Pfam Protein tyrosine and serine/threonine kinase 697 963 IPR001245 GO:0004672|GO:0006468
Gma06g01271 978 SMART LRR_typ_2 538 562 IPR003591 -
Gma06g01271 978 SMART LRR_typ_2 294 318 IPR003591 -
Gma06g01271 978 SMART LRR_typ_2 418 442 IPR003591 -
Gma06g01271 978 SMART LRR_typ_2 125 149 IPR003591 -
Gma06g01271 978 SMART LRR_typ_2 514 537 IPR003591 -
Gma06g01271 978 SMART LRR_typ_2 198 222 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01271 Gma-Chr6 11926935 11930676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01271 8 978 Receptor kinase-like Gene Family AT3G56370 68.782 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gma06g01271 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01271 - - gmx:100780307 1861.27