Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01265 ATGGAGAAAGAGTTGGTGGAATTGTACGAAGCGGCGAAGAAGGCGGCGGACGCGGCCATCTCCGGCGACGGCGAACATGAGGAAAGCAGATGCATCGATGCGCTTGAGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGGTGGGCAAACATCTTAAAGTTCTGACAAAGCACCCAAGGCAGAAAATTAAGTCCTTTGCTATTGACTTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAATGGGGGCTCTGATAGTAAGGATGAGTCGGCTAACAGGGAGAAATCTAAAGCTGGGAAAATGCAAAAGAGTCCTTCGGTGAAGATTGAAAAAGGTGAAACCGTCAAGGTTGAGAAAATTGAAAGGAATGGCACATCAAAGTCAAGCTTTGAAAATATGAAAAAGGTACAAAATGATGTCAAGAATGAGAGAACTGATCGTGCTGCAAGTGTCAAGATGGAAAAGATAGCCGAGGAAAAGCCAATTTCTGGAGCAAAGAAAATGTCATCCAGTTCTACCGCTCCCCCAAAGCTAAAAACTATGATTAAATCCAATGATGCAACACGAGACAAAATAAGGGAAATTCTCCATGAGGCTTTGTCCAAGGTCACTAGAGAGGCTGATGAAGATCTTGTAGCTGTAGTCAATGATTCTGATCCCATCCGTGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGGGCACAAAAGGTGAAGTATAGGTCCTTAATGTTTAACCTTAAGGATTCAAACAACCCTGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCAGAGCAACTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAATATCAGAAAATCACAGAGAAAGCTTTATTTGAATGTGAGCGTGGAGGTCAACCAAAAGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGACCACCtattaccaaatgcagactcgcagtgctgatgaacctatgacaacctatgtcacttgttgtgTCTGCAATAACCGTTGGAAATTCTGTTAG 1104 0.4022 MEKELVELYEAAKKAADAAISGDGEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQKIKSFAIDLIEIWKGIIIKETSKNKNGGSDSKDESANREKSKAGKMQKSPSVKIEKGETVKVEKIERNGTSKSSFENMKKVQNDVKNERTDRAASVKMEKIAEEKPISGAKKMSSSSTAPPKLKTMIKSNDATRDKIREILHEALSKVTREADEDLVAVVNDSDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTAEMASEQRKQEYQKITEKALFECERGGQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCCVCNNRWKFC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01265 367 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 367 - -
Gma06g01265 367 CDD TFIIS_I 23 83 - -
Gma06g01265 367 Pfam Transcription factor S-II (TFIIS), central domain 196 313 IPR003618 GO:0006351
Gma06g01265 367 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Gma06g01265 367 SMART Cys4_2 327 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gma06g01265 367 SMART mid_6 197 305 IPR003618 GO:0006351
Gma06g01265 367 TIGRFAM TFSII: transcription elongation factor S-II 11 367 IPR006289 GO:0003676|GO:0005634|GO:0006368
Gma06g01265 367 MobiDBLite consensus disorder prediction 91 122 - -
Gma06g01265 367 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Gma06g01265 367 ProSiteProfiles Zinc finger TFIIS-type profile. 325 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gma06g01265 367 ProSitePatterns Zinc finger TFIIS-type signature. 329 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gma06g01265 367 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Gma06g01265 367 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 367 - -
Gma06g01265 367 Gene3D - 296 367 - -
Gma06g01265 367 Pfam Transcription factor S-II (TFIIS) 327 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gma06g01265 367 SUPERFAMILY Elongation factor TFIIS domain 2 184 297 IPR036575 GO:0006351
Gma06g01265 367 CDD Zn-ribbon_TFIIS 320 366 - -
Gma06g01265 367 PIRSF TFIIS 2 367 IPR035100 -
Gma06g01265 367 MobiDBLite consensus disorder prediction 89 122 - -
Gma06g01265 367 SUPERFAMILY Zinc beta-ribbon 306 365 - -
Gma06g01265 367 ProSiteProfiles TFIIS central domain profile. 199 322 IPR003618 GO:0006351
Gma06g01265 367 SMART TFS2_5 8 85 IPR003617 GO:0005634
Gma06g01265 367 Gene3D - 175 295 IPR036575 GO:0006351
Gma06g01265 367 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 98 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01265 Gma-Chr6 11858978 11862722 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma06g01265 TFIIS_M 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01265 K03145 - gmx:100776046 724.931