Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01257 ATGATTTTAGggcctgcaaggtgttaccggcagataaaaaacaagccataccccaaatcacgtttctgccgtggtgttcctgatcctaagatcagaatttatgatgttggtatgaagaagaaaggtgttgatgagtttcccttctgcgttcatctggttagctgggaaaaagaaaatgtttcaagtgaagcattggaagctgcTAGAATTGCATGCAACAAATATATGGCGAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGTCATCATGCACAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTCAGCCGTGCTGATTATCTCAAGTACAAGTCAGAGAGCAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAACCGTCAACCTGGACAAGCTTTTTTATCTAGTGCTACTGCTACTGCTTAG 672 0.3229 MILGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKSESRIVPDGVNAKLLGCHGPLANRQPGQAFLSSATATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01257 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 3 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 4 218 - -
Gma06g01257 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 PANTHER 60S RIBOSOMAL PROTEIN L10 4 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 SUPERFAMILY Ribosomal protein L16p/L10e 5 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma06g01257 223 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01257 Gma-Chr6 11797304 11798953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01257 5 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.037 1.02e-142 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01257 K02866 - gmx:100815571 452.981