Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01237 ATGAAGACGATCTTGTCGTCTGAGACCATGAATATTCCCGACGGCGTGAGCATCAAGGTTCACGCTAAGGTTATCGAGGTTGAGGGCCCTCGTGGAAAACTCGTGCGAGACTTCCACCATCTGAACTTGGACTTCCAACTTATTACCGACGATGGCGGTAAAAGGAAGCTCAAGATTGATTCTTGGTTTGGTTCTCGTAAAACCTCCGCCGCCATCCGCACCGCCCTCAGCCACGTTGAGAATTTGATCACCGGCGTCACCAAGGGATACCGATACAAAATGAGATTCGTGTACGCACATTTTCCGATCAACGCTAGCATTGGCAACAACAGCAAGTCCATCGAGATCAGAAATTTCCTCGGCGAGAAGAAGGTGAGGAAAGTGGACATGCTTGAGGGCGTGTCGGTTGTTAGATCTGAAAAGGTCAAAGATGAATTGGTCTTGGATGGAAACGACATTGAACTTGTTTCTAGGTCATGTGCTCTCATTAACCAGAAATGTCATGTTAAGAACAAGGATATCCGGAAGTTTCTTGATGACCCTTTTTTGTGGAGATGGAAGGCCAGGGAAGGGAGGGAGGCTGCCATACCCAACTAA 597 0.4791 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFHHLNLDFQLITDDGGKRKLKIDSWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIGNNSKSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDDPFLWRWKAREGREAAIPN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01237 198 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 Gene3D - 90 189 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 SUPERFAMILY Ribosomal protein L6 90 180 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 Pfam Ribosomal protein L6 102 179 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 180 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma06g01237 198 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01237 Gma-Chr6 11626087 11628053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01237 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.783 4.76e-114 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01237 K02940 - gmx:100811498 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00890 04 8940740 8942111 Gma06g01237 06 11626087 11628053 GST
Gma14g01787 14 48087041 48096052 Gma06g01237 06 11626087 11628053 PCT
Gma02g02006 02 45536116 45539185 Gma06g01237 06 11626087 11628053 PCT
Gma06g01237 06 11626087 11628053 Gma14g01787 14 48087041 48096052 PCT
Gma06g01237 06 11626087 11628053 Gma02g02006 02 45536116 45539185 PCT