Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01222 ATGCCAGAGGTGGTGATGAGTGGAGAGAAGAACTCACTGGGAGTGGAGGGGCTTGCGAAGGAAGATAGTGGTGGAAGTGGGAGCAAGGGTGGTGCTGCTCATTTGAAGGGCTTTATGAGGTGGGAGAAGTTCTTGCCCAAGATGATTTTGAGGGTGCTATTGGTTGAAGCAGATGATTCCACCAGACAGATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGCAGTGGCTGCTGTTCCTGATGGCTTGAAGGCGTGGGAATTACTGAAGGGAAGACCACACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCGTATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAATTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACAGGCATTAATGGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACGAAGCCTGACTGTGAAGCTGAGAGTGGCCCTGTCGATAACATCGATAACATCCAGGAATTTTCTCCGCTGAAATGTGGGGAAGCGTATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCATTCGCTTAGGCCAGACATTAATGATGCATGCCAGTCATGCTGGAGGATTAAATGTGAGCATCTGCAAAAATGGTGAGGCAAGCACAACTGATGCTGATCCAGAGCATTTTGGGAATGGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATGAACTCTTCCAAGGAAGCCATTGACTTCATTGGAGCATTTCATACTCATCCAATCTGCACCCTGAAAAATTCCACAGTTAATTGCACGGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGACAACAGATAGCAAATTGTGAAAAAAACATCTCACGCATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAACCTGAACTTGCAACCTCACACTCCCAGCCAGGGCATTCTCTCCCAATTCCTGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACCTATGGTTCTGTATTTCCTTCAGTGTTTCGTGCCCAGTCAGGTTCACCAGCAATGCCAAGTCCAAATTCAGTTATGCTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAACCTGGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAAAATGCAGAAGATCAAGGACATATCTCTCCTACCACTGATCAAAGTGTTTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGCAAGCATAAAGACCTCACAAGCAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATTGCAAAGAATATGATCATTCACATATTTCTGACACACTGGAGAGGAGAGCATGA 2106 0.4359 MPEVVMSGEKNSLGVEGLAKEDSGGSGSKGGAAHLKGFMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYKAVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSVSGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDCEAESGPVDNIDNIQEFSPLKCGEAYPSGTETQQVETSIRLGQTLMMHASHAGGLNVSICKNGEASTTDADPEHFGNGISGEAHDNHYVQMNSSKEAIDFIGAFHTHPICTLKNSTVNCTGKFDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQISTPAVLINFSDQQRQQIANCEKNISRIATGCNSDSSTPSMQRCIVSPTTVQSKEPELATSHSQPGHSLPIPVKGVRFNDLCTTYGSVFPSVFRAQSGSPAMPSPNSVMLLEPNFQVNAFYQSNMKESSSEQLYEPGGPNGNTTQNHIVYTQEHKSENAEDQGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHKDLTSNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDCKEYDHSHISDTLERRA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01222 701 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 36 667 - -
Gma06g01222 701 MobiDBLite consensus disorder prediction 564 578 - -
Gma06g01222 701 Pfam Response regulator receiver domain 52 164 IPR001789 GO:0000160
Gma06g01222 701 SUPERFAMILY CheY-like 50 177 IPR011006 -
Gma06g01222 701 SMART REC_2 50 166 IPR001789 GO:0000160
Gma06g01222 701 ProSiteProfiles Response regulatory domain profile. 51 170 IPR001789 GO:0000160
Gma06g01222 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 667 IPR045279 GO:0009736
Gma06g01222 701 MobiDBLite consensus disorder prediction 557 578 - -
Gma06g01222 701 CDD psREC_PRR 52 156 - -
Gma06g01222 701 Pfam CCT motif 631 673 IPR010402 GO:0005515
Gma06g01222 701 ProSiteProfiles CCT domain profile. 631 673 IPR010402 GO:0005515
Gma06g01222 701 Gene3D - 48 235 - -
Gma06g01222 701 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01222 Gma-Chr6 11488476 11492974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01222 296 675 Response Regulator Gene Family AT5G24470 28.040 1.14e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma06g01222 Response_reg 2.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01222 K12130 - gmx:100777119 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02185 04 52307866 52313152 Gma06g01222 06 11488476 11492974 GST