Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01201 ATGTGTATGATGGAAGGAGATGAGAATATTCAAGCATCAACAAAGGGAAAAAATGTGGAAAGCTTCACCAGCTTGGAGGCACCAAGGAAGAAAAGCAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCAAGAGATCTTGGCCTTCAGCCTCGCCAAGTTGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAGCGCATAGAGCAAGAGTACAGAAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCCTAAAGAAAGAGAAGGACTCTTTGCAATTAGAGTTGCAGAAGCTAAGTGATTTGGTGGTGACATCTCAAGATGGTGGAAGGGAAGACAAGGATGGCAAAGAAAACAGCATAGAAGATGGTGGCTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAAAAACCAAGGTTTTCAAATGATGAGGGTTTGGAGGAGAGAATAGGTGTGTACTCAGATGACCAAAATGAGAATAGCATCATAAGGGGTGTTGAGAAATCTGAGGACAAAGGACACCAACTTCTCAGAATGGATGATCATGATCATGCAGATATGCCATTGGCATCACTTGAAAAATGGTATAGTGGTGTGGACCCTAGTGGCATCTTGGACCAGTCATGTAGCAGTTCTCAATGGCTAGATTTCTGGACTTGA 756 0.4246 MCMMEGDENIQASTKGKNVESFTSLEAPRKKSKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQLELQKLSDLVVTSQDGGREDKDGKENSIEDGGSGSGYSSWKPEAKKPRFSNDEGLEERIGVYSDDQNENSIIRGVEKSEDKGHQLLRMDDHDHADMPLASLEKWYSGVDPSGILDQSCSSSQWLDFWT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01201 251 MobiDBLite consensus disorder prediction 135 192 - -
Gma06g01201 251 CDD homeodomain 38 93 IPR001356 GO:0003677
Gma06g01201 251 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Gma06g01201 251 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 251 IPR045224 GO:0003700
Gma06g01201 251 MobiDBLite consensus disorder prediction 137 151 - -
Gma06g01201 251 Gene3D - 27 101 - -
Gma06g01201 251 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 251 - -
Gma06g01201 251 MobiDBLite consensus disorder prediction 1 38 - -
Gma06g01201 251 SUPERFAMILY Homeodomain-like 25 92 IPR009057 -
Gma06g01201 251 MobiDBLite consensus disorder prediction 24 38 - -
Gma06g01201 251 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Gma06g01201 251 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Gma06g01201 251 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Gma06g01201 251 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
Gma06g01201 251 Coils Coil 84 132 - -
Gma06g01201 251 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Gma06g01201 251 SMART HOX_1 35 96 IPR001356 GO:0003677
Gma06g01201 251 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01201 Gma-Chr6 11299218 11300226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01201 3 251 Homeobox Transcription Factor Family AT2G46680 40.288 9.39e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma06g01201 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01201 K09338 - gmx:100793260 509.99