Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01186 ATGGCGAACGAATTAGTAGCTCGTGCCTCACATGCCCCAACATCTGAGTTACTTTCCCGGACCATCTTTGCTGTATTTGACACTATCAAAGCAGCCAATGAGGTTGTGATTCACAAGGAAAATTTAAAGAGATTCTCTGTTCACTTGAAGAATGTCTCACTCATATTGAAGTCTTTATCGAAGCAAGACATACACAATTCCGCGAGCTTGGAAAATGCTATGAATGGTCTCTACCGAGAGGTTGGTGTTGCTAAGCAGCTTTTTGTTGAGTGCAACAATAGAAGTAAGGTTTATCTTTTAATCAATTCCAGAAAGATCGTTACACACTTGAATTGTTGTACCAAGGATATCGGTCGTGCAGTAAGCCTCATCCCTTTGGCCTCTTTAGACATTAACTCTGATTTAAATCAACAGATAAGTGAGTTATGCAAGAAAATGTTGGATGCTGAGTATCAAACAGCTGCAGCAGATGAGGAAATTTTGAAGAAAATTGAGACAGCGATACAAGAGGGAAATGTTGATCGGTCGTATGCGAATCAGTTGCTAACCTGCATTGCAGATGCTATAGGGGTCCCCTTGGAGCATGGTGCATTGAAGAGAGAATTTGAAGAGCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGGTAGATGTGGCAGAAGCTCTACATATGAAGCAGATTATTGCAGTGCTTGGAAAGGCTGATTTTATAACTTCAGCACAAGAGAAGGAAACTAGGTATTTTGAGAAGAGAAACTCCTTGGGAGAGAGACCATTGATGCCTCTTCAGTCTTTTTACTGCCCAATCTCTCTCGCTATTATGGCGGACCCTGTGGAGACTTCTTCCGGGAAGACATTTGAGAGAAGGGAAATAGAGAAATGGTTTGCTGAAGGAAACACTCTCTGTCCCTTGACCAGGTTGCCTCTAGATACTAAAATCCTAAGGCCAAATAAAACTCTTAAGCAGTCTATTCAAGAGTGGAAGGACAGGAACACAATGATTACCATTTCTGCCATCAAATCCGAACTTGAAACAAATGATGAAGAGGGAGTGGTTCAATCCTTAGAAAAGCTACAGAAGCTTTGCTTAGAAAGAGAGGTTCACCGAGAATGGTTAAAAATGGAGAATTACATTACTGTTCTTATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCATGTTCTACTCATCCTGTGTATGCTTGCAATGGATAATGCAGACAACAAGGAAGATATTGCTAAAGTGGATAATGCACTTGGATTGATTGTTCGCTCACTTTCACGTCAAGCTGAGGAACGCAAGCTGGCATTGGTGTTGCTGTTGGAGTTATCTAAATGTAAAATGGTGTGCAGTCTCATAGGAAGCATTCAAGGAAGCATACTTCTCCTGGTATCAATGATAAATAGTGATGATGTTGAAGCAGCCAAACATGCACATGAGCTGCTGGTGAAACTCTCTGTTCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGATCAGAAAATATGAAAATAGTTATGACTGAAACTTTGTCCAAAATTACATTAACCGACCAGAACAAATTGTCCTTGGTCAAAGATGGGGCATTGCAACCTCTTGTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAAGTGGCTGTCAAAGCTCTACTACAGTTCTCAAGCTTGCCAGAGAATGGCCTCCAGATGATCAAGGAAGGTGTTGCTCCACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTTCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCTATGTCAACAACTTACCAACATGCTGAACCAGAACAGGTTTCATTGCTAGATTCTGAGGAAGACATATATAAATTCTTCTCTTTAATTTCTTTGACGGAACCTGAGATACAAAATAAGATTCTCAGAGCTTTCCAGGCATTGTGCCAATCTTTCTATGGCCTCCGCATCAGAAAGAGGTTGAGACAGATATCAGCAGCTAAAGTTTTGGTCCACTTGTTGGAGCTTAATACCCAACCAGTGCAGGTCAATTCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGGTGATGATGGCAACATCTCATCACATATAACTGAAAGATTCATCAAAGTCTTGCTTACCATCATTGAGGCCTCTGATGACGCTGAAGCGATGGTTACTGCTATGGGTATCATCTCTAAACTACCACAGGAGTCTCACATGACTCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACCGACCAACATAAGCATGTCTCACACAAAAAACAAGTCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAATTTGGAGTGGCAGAAGAGAGTGGCATTAGAAGGCATAATCCCAGTGCTGGTGCAGTTGCTGCATTCCGGAACACCCTTTACAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCGCTTGAGCGAGCCAATAAAGAAGCCTAGCATTTTCAAATGCTGCCTTGTAGCCAAAGAAACTGGTTGTCCAGCACACTTAGGCACCTGCTCAGTTGAGTCTTCATTCTGCATTTTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCATGCTTGCAGATCAAGATGATGGAACGCGTGAAGCTTCCTTAAATGCACTGCTAACTTTGGTTGATAGTGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCTATTGCACCAATGATACAACTATCGAGTGTTCCAATTCCGAGGTTGCAGGAAAGAATTCTAATAGCTTTAGAAAGAATTTTTCAACTAGATGATGTGAGAAATAAGTACAAAGTTGTGGCCACGATGCACTTGGTAGAAATAACTCAGGGGAAAGATAGTCGAATGAGAAGTCTTGCTGCCAAGTGCCTTGCTCAATTGGGTGAACTTAATAAACAGTCCTCTTATTTTTAG 3024 0.4097 MANELVARASHAPTSELLSRTIFAVFDTIKAANEVVIHKENLKRFSVHLKNVSLILKSLSKQDIHNSASLENAMNGLYREVGVAKQLFVECNNRSKVYLLINSRKIVTHLNCCTKDIGRAVSLIPLASLDINSDLNQQISELCKKMLDAEYQTAAADEEILKKIETAIQEGNVDRSYANQLLTCIADAIGVPLEHGALKREFEELKNEMENAKSRVDVAEALHMKQIIAVLGKADFITSAQEKETRYFEKRNSLGERPLMPLQSFYCPISLAIMADPVETSSGKTFERREIEKWFAEGNTLCPLTRLPLDTKILRPNKTLKQSIQEWKDRNTMITISAIKSELETNDEEGVVQSLEKLQKLCLEREVHREWLKMENYITVLIGLLSSKNREIRKHVLLILCMLAMDNADNKEDIAKVDNALGLIVRSLSRQAEERKLALVLLLELSKCKMVCSLIGSIQGSILLLVSMINSDDVEAAKHAHELLVKLSVLDQNVIEMAKANYLKPLLLKLSTGSENMKIVMTETLSKITLTDQNKLSLVKDGALQPLVQLLLNDDLEIKKVAVKALLQFSSLPENGLQMIKEGVAPPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTYQHAEPEQVSLLDSEEDIYKFFSLISLTEPEIQNKILRAFQALCQSFYGLRIRKRLRQISAAKVLVHLLELNTQPVQVNSLKLFYCLTEDGDDGNISSHITERFIKVLLTIIEASDDAEAMVTAMGIISKLPQESHMTQWLLDSGALKTILTCLTDQHKHVSHKKQVIENSVQALCRFTVSTNLEWQKRVALEGIIPVLVQLLHSGTPFTKQNAAISIKQFSESSYRLSEPIKKPSIFKCCLVAKETGCPAHLGTCSVESSFCILQANALEPLVRMLADQDDGTREASLNALLTLVDSEAPQSGSKVLANSNAIAPMIQLSSVPIPRLQERILIALERIFQLDDVRNKYKVVATMHLVEITQGKDSRMRSLAAKCLAQLGELNKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01186 1007 SUPERFAMILY ARM repeat 785 1001 IPR016024 -
Gma06g01186 1007 SUPERFAMILY RING/U-box 253 333 - -
Gma06g01186 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Gma06g01186 1007 SUPERFAMILY ARM repeat 504 855 IPR016024 -
Gma06g01186 1007 Gene3D - 664 865 IPR011989 -
Gma06g01186 1007 Gene3D - 461 663 IPR011989 -
Gma06g01186 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
Gma06g01186 1007 Gene3D - 339 460 IPR011989 -
Gma06g01186 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 572 615 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 490 530 IPR000225 GO:0005515
Gma06g01186 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Gma06g01186 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Gma06g01186 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Gma06g01186 1007 Gene3D - 16 128 IPR036537 GO:0007166
Gma06g01186 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Gma06g01186 1007 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1007 - -
Gma06g01186 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1007 - -
Gma06g01186 1007 SUPERFAMILY ARM repeat 336 491 IPR016024 -
Gma06g01186 1007 Pfam Armadillo/beta-catenin-like repeat 532 566 IPR000225 GO:0005515
Gma06g01186 1007 Coils Coil 195 222 - -
Gma06g01186 1007 Gene3D - 866 1005 IPR011989 -
Gma06g01186 1007 Pfam MCAfunc domain 29 154 IPR045766 -
Gma06g01186 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01186 Gma-Chr6 11173691 11177815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01186 263 1007 U-box Gene Family AT1G76390 27.764 6.67e-59 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01186 - - gmx:100818273 1907.88