Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01178 ATGGGTAGCTTCAGCGAAGACGAGGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTGTTGTGTCCATTGCAGATGATGAAGGGGTATCCAATGGTTTTGATTATGAAATGTGGATTCGGAGTCCAAGGAGTGTGAGTGAGCGTAGGGGCACGTTTATGAAGAGGATGGGACTGAGTAGTGTGGATTTGGTTGCCCTTGAGAATGAAAACTCAGTAGATGTGTGTAGTGTTGAGTGTAAAGAGGAAGTGATGGATAGAGTAAATGTTAACAGTGGCGCTGTGACCCGAAATTGTGTTATGGAAGAGGAATTCTGTTCAAGCAGGACATCAATGTCTTGTTGGTCTAGGGAGAATTCTTCAGGGGGGTTTGGTATAGTGGATAACTCGCCGTGTCAAGATGGAAATTTGGATCAGGAGGGGCTGCAGTGTAGGGAGATGAGTGAGGGAAGAGATCTGGATTCAGATCGGTCAGTGGTTGCAGAGGAACATAAGGAATCGGAGAATGCCTTTAGGGAAACGGATGCTAATGTTTCTGTTGGGAAGATGAACAAGTATAAAAAGGGTTGGCTCAGAAGATTGCGGTCGATAACGTGCATGCTTAATAGGCAAGATGAAGGTGATAATGGGAGAGAAGAAGGTCTTGGTGAAATGTCAGGAACTTGTAGGCTTCAGAAAGTTAAGGTCCGTCAGTCCAAGAAGCAAATGAAGGAACTTTCGGCTCTTTACATTAGGCAAGATTTCCAAGCACATGAAGGTTCGATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGACGGGGTTGTGCGCTTATGGCAAGTGGTTGAGGAGGATAGGTGTAATGAAGTTGACATTCCAGAAATTGATCCATCCTGCATTTATTTTACTGTAAATAATCTCTCTGAATTGACACCACTGTTTATGGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCAGCTTGCATTGTTTTTCCTCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTTCGGGGGCACAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGAATCATGACCATTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACGTGCATACAATTCAATCCTGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGGAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATTGATATCAAAGATATAGTGACGGCAGTATGCTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGACTGGCAATTGTCGATTTTATAATGTATCAGAGAATCTCTTGCAATTGGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACGGGGAGCCCAATGTGTGCATCAATGACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAATGTATATCTATGGAATGTTAGTCAAGAAGAGTCTAATCCCTTAAAAGCTAAGAAGATTACGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTAGCAGTACCTTGGCATGGTTTGAAATCTCAAAATATTGAAATCGAACATCAACTGGATGCCTTGGATAAAACATCATCTCAAGTTATACAACTCAGTCCACCTGCTTCGTTCTCTCTGAGTCAAGAGTTCTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCTGTTTCAAGCCCCAAGGCTAAAGCATCAGTGATGCGTAAATCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCGGCTTGA 2106 0.4259 MGSFSEDEECRFFDAQEDVVVSIADDEGVSNGFDYEMWIRSPRSVSERRGTFMKRMGLSSVDLVALENENSVDVCSVECKEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCWSRENSSGGFGIVDNSPCQDGNLDQEGLQCREMSEGRDLDSDRSVVAEEHKESENAFRETDANVSVGKMNKYKKGWLRRLRSITCMLNRQDEGDNGREEGLGEMSGTCRLQKVKVRQSKKQMKELSALYIRQDFQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKISKLKSLKKTSDSACIVFPPKIFRLLEKPLHEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLTGNCRFYNVSENLLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPMCASMTSDGKHILSACEDSNVYLWNVSQEESNPLKAKKITSCERFFSNASVAVPWHGLKSQNIEIEHQLDALDKTSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEEKLPVSSPKAKASVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 423 - -
Gma06g01178 701 Gene3D - 229 588 IPR015943 GO:0005515
Gma06g01178 701 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Gma06g01178 701 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Gma06g01178 701 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Gma06g01178 701 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 700 - -
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 423 IPR001680 GO:0005515
Gma06g01178 701 SUPERFAMILY WD40 repeat-like 243 691 IPR036322 GO:0005515
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 280 - -
Gma06g01178 701 Pfam WD domain, G-beta repeat 346 381 IPR001680 GO:0005515
Gma06g01178 701 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Gma06g01178 701 Pfam WD domain, G-beta repeat 247 278 IPR001680 GO:0005515
Gma06g01178 701 PANTHER WD REPEAT DOMAIN 44 6 700 IPR040324 -
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 280 IPR001680 GO:0005515
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 391 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 656 693 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 517 557 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 476 516 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 427 465 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 385 424 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 240 279 IPR001680 GO:0005515
Gma06g01178 701 SMART WD40_4 344 382 IPR001680 GO:0005515
Gma06g01178 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01178 Gma-Chr6 11095748 11098845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01178 243 415 U-box Gene Family AT2G33340 23.881 1.59e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01178 - - gmx:100817209 1396.33