Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01157 ATGGACTTGGAGAGCGTTGAGTGTGTGTCATCCTCGGACGGCATGGATGAGGATGAGATCCACGCCAACCATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAACGGAGGCACTAGTAACATCAATTCTGTGGGTCCCAACGCAATTGCTCCGGCAACAAGCGTCCATGAGTTGCTGGAATGCCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAACGGCCACACACTGTGTTCCACGTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTCGGGGATATTCCTTTCCTTGTTGCTCATTTGAGGGATGACCATAAAGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAATCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAAGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGGAAACTCATTTGGGAGGGTACACCACGAAGTGTTCGGGATAGTCACCGTAAGGTTAGGGATAGCCATGATGGGCTCATCATTCAAAGAAACATGGCCCTATTTTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTCAGAGTCACAGGAAGAATATGGAAGGAACAACAGCAACAGAATTCGGAAGCTGGGGTGTGCATGCCAAATCTCTGTAGTTGA 984 0.4604 MDLESVECVSSSDGMDEDEIHANHHHHSEFSSTKPRNGGTSNINSVGPNAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQQNSEAGVCMPNLCS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01157 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Gma06g01157 327 MobiDBLite consensus disorder prediction 33 47 - -
Gma06g01157 327 CDD Sina 177 305 - -
Gma06g01157 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 115 IPR013083 -
Gma06g01157 327 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Gma06g01157 327 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 316 - -
Gma06g01157 327 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gma06g01157 327 SUPERFAMILY TRAF domain-like 116 308 - -
Gma06g01157 327 CDD RING-HC_SIAHs 61 99 - -
Gma06g01157 327 MobiDBLite consensus disorder prediction 23 47 - -
Gma06g01157 327 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Gma06g01157 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 316 - -
Gma06g01157 327 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 304 IPR008974 GO:0005515
Gma06g01157 327 SUPERFAMILY RING/U-box 54 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01157 Gma-Chr6 10897554 10900260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01157 31 311 C3H Transcription Factor Family AT2G41980 76.157 9.36e-165 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01157 K04506 - gmx:100810573 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02251 04 52913807 52924935 Gma06g01157 06 10897554 10900260 GST