Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01144 ATGTCGTCGACGGTGCTGGAGGTGACGCGGGCGGCACACGAGGAAGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGACCCTGCCTCCAACAAAGAGCGCTTGTATCAGAGTCACCGTGTGCGAAACATGATCGACACCATTACTTCCACCACTGAAAAGCTTATTGGGGTATATGAAGATAACGACAATGCAAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCACTGGAATTAACGTTTTTAGCGCCTTTTATGATAGACTTAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCTCGTGTTGTTGACGCCAATGACGATTATGAAACACTTCTCAATGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAATCACTTGGTCGATACCTAgacttgcatgaattatattatcagtatgtcaattctaagtttggagagccaattgagtattctgcataccttgatgttttctcagacacagataagattccccgcaaaatgaaAATGACCAGgcagtaccgagaatatttggcgaatcttttggagtatctgttatactttttccagcggacagaacccctgcaagatcttgatcgaattttgtcaaagGTAACAActgaatttgaagaaagttgggttgttggaaaggtacagcgatgggaaaatgacaatcaggaaaatggacatgtacttgctgagcatgctcccattgatcttgattattatagtacaattgaagaattgatggaagtcggccctgaaaggttaaaggaGGCACTGGCTGCATTGGGGCTTAAGACTGGTGGTACTGTTCAGCAACGCGCAGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGTGCATGTGGTGTAGAAAAGAATGGGGTTGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCCAAAATGACAAAACTTTGTCATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACTCTGAAAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGGGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTTGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGACTTACAGCGCCAGGGACTGATATGA 1530 0.3451 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIGVYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETLLNEEPQIEFSGEESLGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESWVVGKVQRWENDNQENGHVLAEHAPIDLDYYSTIEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGACGVEKNGVAAVPQEDGNSKEIALMEAKMTKLCHLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDSESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01144 509 Coils Coil 353 382 - -
Gma06g01144 509 MobiDBLite consensus disorder prediction 361 383 - -
Gma06g01144 509 Pfam Replication stress response SDE2 C-terminal 223 304 - -
Gma06g01144 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Gma06g01144 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 509 - -
Gma06g01144 509 PANTHER BNAA03G01920D PROTEIN 1 509 - -
Gma06g01144 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Gma06g01144 509 MobiDBLite consensus disorder prediction 363 382 - -
Gma06g01144 509 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Gma06g01144 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01144 Gma-Chr6 10754111 10760901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01144 1 509 C2H2 Transcription Factor Family AT5G06160 73.674 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01144 K12827 - gmx:100820038 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02263 04 53084182 53091357 Gma06g01144 06 10754111 10760901 GST