Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01142 ATGAAAATTCCCAATACCATACTCAAACTCTTCCTCTTCATCCTCTTGAACCCATCCCAGATAGCAATAGCACTAGCAAGTATAGAAGCATGTTTAGACAGCGTTTGCCAAACTCACGAGCCAGTAATCCGATTCCCGTTCCGCATAGAGGGAGAGCAAGAGAATTCATGTGGCCACCCAGGGTTCAGCGTTTCTTGCAACCACAACGGCCAAACACTACTTAACCTATCTTACTGCGGCGAAGAACTCAGAATCCAAAGAATAAACTATGCCGCGCAGCAACTATGGGTGAACGACCCCAACAACTGCCTCCCCAAACGCCTCCTCTCTCTTAACCTCTCCGCCTCTCCCTTCGACGCTGTTTACCGCCAAAAATTCACCTTCTTCAACTGCTCCTTCAACTTGGAGTACCTCGTCCGTCGTTACCGTCCAATAAGTTGTCTCAGCGATTCTCCCAAGTACCTCGTTTTTGCGACGCCTTCTTCGACTGTGTTTGGACACTTGTCGTCTGTGTGTGACTTGGTGGCGACGGTGACGGTGCCGGTTCAGTCGCCGTTTAATGATCGAGTGACGTCGTCAGAACTCAGCGACGATCTGCGATTCTCGTGGGACTCGCCGTCGTGCGGGAGGTGCGAGTCGCACGGTGGACGGTGCGGATTCAAGAGCAACGAGACTTTTGAGCTTGATTGTTCCCTTGTCCCTTCAAAAGGGATTTCCCATGGTGCACGTTACGCCATAGTCATATGCATAGGGGCAACAGCTTTGTTGTGCTGCATGGGAGTATTGAGGTGCATCCACAGCTGGTTAAGAATCGGGAACCAAGATGGGCCTTGGGCTAATGAAACGGTGCCAGATTTTGAGGCTCTAGCGGGCTCACGGCCCACAACAGTCACGGGCCTCGACAGGCCCACAATTGAATCGTACCCAAAAATAGTGTTAGGTGAGAACAGAGGCTTACCAAAGAAGGGTGACAAGACCTGCTCAATATGCCTATCAGAGTACATACCCAAAGAGACAGTGAAAACCATACCAGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCGTGCCCAATTTGCCGAACTTCTCCACGAAAGTTACCACAACCACGTGCTCGATCATCACCACAATAA 1158 0.5043 MKIPNTILKLFLFILLNPSQIAIALASIEACLDSVCQTHEPVIRFPFRIEGEQENSCGHPGFSVSCNHNGQTLLNLSYCGEELRIQRINYAAQQLWVNDPNNCLPKRLLSLNLSASPFDAVYRQKFTFFNCSFNLEYLVRRYRPISCLSDSPKYLVFATPSSTVFGHLSSVCDLVATVTVPVQSPFNDRVTSSELSDDLRFSWDSPSCGRCESHGGRCGFKSNETFELDCSLVPSKGISHGARYAIVICIGATALLCCMGVLRCIHSWLRIGNQDGPWANETVPDFEALAGSRPTTVTGLDRPTIESYPKIVLGENRGLPKKGDKTCSICLSEYIPKETVKTIPECGHCFHAQCIDEWLPLNASCPICRTSPRKLPQPRARSSPQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01142 385 Pfam Wall-associated receptor kinase C-terminal 169 230 IPR032872 -
Gma06g01142 385 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Gma06g01142 385 SMART ring_2 327 368 IPR001841 -
Gma06g01142 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 379 - -
Gma06g01142 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 379 - -
Gma06g01142 385 Pfam Ring finger domain 326 369 IPR001841 -
Gma06g01142 385 SUPERFAMILY RING/U-box 322 373 - -
Gma06g01142 385 Pfam Wall-associated receptor kinase galacturonan-binding 31 99 IPR025287 GO:0030247
Gma06g01142 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 373 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01142 Gma-Chr6 10723767 10725564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01142 29 372 C3H Transcription Factor Family AT2G46495 36.364 1.32e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01142 - - gmx:100818969 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02265 04 53113581 53123187 Gma06g01142 06 10723767 10725564 GST