Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01068 ATGACTTCATCGCGGGATGATACAAAAGTTGTGCTAGTTGCTTGGTTTCTATTAATGATCTCAGCAATGTCACAAACAATTCATTCCAGCTGCCAAAATAAATGTGGAAGTGTTAACATTCCTTACCCATTTGGTACAGCTGAGGACTGCTACTTGAACAGCAACTTTTATGTTGCGTGTAACACAAGTCACAACCCTCCCAAACCATTTCTGTGGAATGTCACCAAAAGTATTGAGATCTTAGAGGTTTCATTGAATGGCCATTTGAGGATAAAATCCCCTGTAGCTTATGTGTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATCTATGACTTTGCAAGCATTCCCCTTCTCATACACCCAGAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAAGCATCAATGCAACAATTGGGAAAAACTACTCAGCTGGAGGGTGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAGCCAATGGTTCCTGGTTTGGCGTTGGTTTCTGCCAAACCTCTATCCCAAAAAACATCTTGGCATATCAAGCTCGTGTGCTGAGTTTAAATTTGATGCATAGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCAAGTTCTCCACTGATGACTTCATCAAACTTCAGAAGAGAAAAACCGCTCCCACAGTGCTAGATTGGGCTGTTGGGAATCAAACATGCCAAGAAGCTAAGAAGAATTTGACTAGTTTTGCCTGCCAAGAAAATAGCAAGTGTATTGACTCTGACAATGGACCAGGGTACCTTTGCAGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCAAGATATTGATGAGTGTGCCAATCTGAGTCTAAATGACTGTTCAGATCTTTGCATTAATCTACCTGGGAGCTATAATTGTTCTTGTCCTAAGAGCAAGGGGTACCAGGGAGATGGCAGAAAAGGAGGAAGTGGCTGCGTCTCGAATCTACAACATGTGGTTAATCAGATTGTGATAGGCACTGGCATAGGCCTTATGCTGTTGTTAATTGGTAGTGGCTGGCTATACCATGTGTTTCGTAAAAGAAAAAGAGTGAGACTCACAACAAGATATTTCAAGCAAAATGGTGGCTTAATGTTACAGCAGCAAATTTCAAACATGGAAGGATCATCTGAGAGAGCCAAAATTTTCACTGCAAGAGAGCTAAAGAAAGCCACCGAAAACTTTCACGAGAGCAGAATCATTGGCAGAGGAGGATACGGTACAGTTTATAGGGGAATACTTCCAGATGACCATGTTGTTGCTATCAAGAAATCAAAACTAGTAGACCACAGCCAAACCGAACAATTCATCAATGAAGTGGTTGTACTGTCCCAAATTAACCACAGAAATGTTGTCAAACTCCTAGGTTGCTGTCTGGAGACAGAAATGCCACTTCTGGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATTCACAACAAAAACACCACACTTCCTTGGGAAGCACGTCTAAGAATAGCAGCAGAAACAGCTGagttgctaaccggaagaagggcACTTTCTTTTGACATGCCAGAGGAGGAGAGAAACTTAGCCTTGTATTTCCTTTCAGCTGTGAAGGATGATTGCTTGTTCGAAATTGTTGAGGATTGTGTGAGTGAGGGAAATAGTGAGCAAGTAAAGGAAGTTGCTAACATTGCTCAATGGTGCTTGAGGCTTAGAGGGGAGGAAAGACCTACCATGAAAGAAGTGGCAATGGAATTGGATAGTCTTAGAATGATGACAACAACAACAACTACATGGATTAATGCTACATCAAATTCAACAGAATATGTGATTGGTGAAAGGTCAGGTCTAAGTCTAACAGAAACAACAGACTATGCTAATTGTCATTATACTTGTAATACATGTGCTGGGCATGAGGATGAAACCATTTGCAACGATGTGATGTCACCGATATGGGATGGTCGATGA 2004 0.4082 MTSSRDDTKVVLVAWFLLMISAMSQTIHSSCQNKCGSVNIPYPFGTAEDCYLNSNFYVACNTSHNPPKPFLWNVTKSIEILEVSLNGHLRIKSPVAYVCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFIGIGCDTLSSINATIGKNYSAGGCFSLCSSVESSANGSWFGVGFCQTSIPKNILAYQARVLSLNLMHRDMNIPCSYSLLVEEDSFKFSTDDFIKLQKRKTAPTVLDWAVGNQTCQEAKKNLTSFACQENSKCIDSDNGPGYLCRCLEGYVGNAYLHGGCQDIDECANLSLNDCSDLCINLPGSYNCSCPKSKGYQGDGRKGGSGCVSNLQHVVNQIVIGTGIGLMLLLIGSGWLYHVFRKRKRVRLTTRYFKQNGGLMLQQQISNMEGSSERAKIFTARELKKATENFHESRIIGRGGYGTVYRGILPDDHVVAIKKSKLVDHSQTEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNKNTTLPWEARLRIAAETAELLTGRRALSFDMPEEERNLALYFLSAVKDDCLFEIVEDCVSEGNSEQVKEVANIAQWCLRLRGEERPTMKEVAMELDSLRMMTTTTTTWINATSNSTEYVIGERSGLSLTETTDYANCHYTCNTCAGHEDETICNDVMSPIWDGR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01068 667 Pfam Protein tyrosine and serine/threonine kinase 419 522 IPR001245 GO:0004672|GO:0006468
Gma06g01068 667 CDD EGF_CA 289 325 - -
Gma06g01068 667 ProSiteProfiles Protein kinase domain profile. 416 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01068 667 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Gma06g01068 667 Gene3D Transferase(Phosphotransferase) domain 1 390 522 - -
Gma06g01068 667 Gene3D Laminin 239 291 - -
Gma06g01068 667 SMART egfca_6 242 288 IPR001881 GO:0005509
Gma06g01068 667 SMART egfca_6 289 334 IPR001881 GO:0005509
Gma06g01068 667 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524
Gma06g01068 667 Gene3D Laminin 292 331 - -
Gma06g01068 667 SUPERFAMILY Protein kinase-like (PK-like) 402 613 IPR011009 -
Gma06g01068 667 SMART egf_5 241 288 IPR000742 -
Gma06g01068 667 SMART egf_5 292 334 IPR000742 -
Gma06g01068 667 Gene3D Transferase(Phosphotransferase) domain 1 523 621 - -
Gma06g01068 667 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Gma06g01068 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 522 623 IPR045274 GO:0007166
Gma06g01068 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 524 IPR045274 GO:0007166
Gma06g01068 667 SUPERFAMILY EGF/Laminin 288 324 - -
Gma06g01068 667 ProSiteProfiles EGF-like domain profile. 246 288 IPR000742 -
Gma06g01068 667 ProSitePatterns Calcium-binding EGF-like domain signature. 289 314 IPR018097 GO:0005509
Gma06g01068 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 522 623 - -
Gma06g01068 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01068 Gma-Chr6 9995646 9998598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01068 522 624 Receptor kinase-like Gene Family AT1G21250 41.346 1.63e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gma06g01068 PK_Tyr_Ser-Thr 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01068 - - gmx:100797492 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01068 06 9995646 9998598 Gma06g01068 06 9995646 9998598 ECH
Gma04g02332 04 53745708 53749453 Gma06g01068 06 9995646 9998598 GST
Gma14g01464 14 31554668 31558252 Gma06g01068 06 9995646 9998598 PCT
Gma06g01068 06 9995646 9998598 Gma14g01466 14 31620478 31624117 PCT