Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01060 ATGGGGACTGAGGATGGAACAAGCGATGCTGATAAAACGGAATTTGATGAACGAGTTCAGTGTTTGAAAGGTGCCGTAATGGATGGTGGGGTGGCAATTGTGGATGGGAATTGTGTTTCTGAAGAGGGCCAGCTCTTGAAAAGTGAAGCCATGAATGTTGGGGTTGCAATTGCTGATGAAAATGGTGTTGCTGAAGAGGGTAGGATCGGGAAAAGTGAAACCTTTTGTAATCGGGTGGCAGTTGCAGATAAAGGGGACTCTGGTGGAGTTGAATGTTTGCAAACATATAAGAGGCGTAAGAAGTCAAGTTCAAAAGGAGAAGTTCAGGAACAATGCAGAAAAAACGTGGAAACTTCAACTCATATAGCAGATCAGGATGTGACGAAACCATGTGATGTAGCCTTATGCAATACTTCAGATGATTGCTCCCATGGACAGTGGGGAAATATTGTGCTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGCATAGAGGGGTGCATAAGGGAAGCACTTATTCATTATCCTAAACATAATCATACCACTACAGTTATGGAAACTTTTAAAATTGACAAAGATGGACAAGAATGCTCTTTGCAATTTGAGCCACTTTCTCATAGAACAGAGAAGGAAGCTAATGGGCATGCAGATGTCATGTGTAATGGAGGTTCTAGTGAATCACCTGACCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGTAATGTTTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTACTTGACTTTACCGTCATGAATTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACGCTGGTAATGAGATTGTTGCTCTTGCCAAGAGCCTCTCTAACATGTCAAGAACTTCCTACTCTGAGCTGGTGGGAATTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGTGGAATTTGACTGTTGCATGAAACCAGAACAGACACAAGCATGTGCTATGTACAAAATTTGCAGTTGCAAGTGTTGTGGAGAGAAGGCAGATGACACAGACTGTTTGGTTTGTGATTCATGTGAAGAGATATACCATGTGTCCTGTATTGAGCCTGCAGTGAAAGAAATAATACCTCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAATGTGATTGAATCTCTCCATGAGAATTGTGTGCTATGTGAAAGGTTAAATGATGCAAAGACCCTGGATGATGTAATTGGTGATGGAAGCTTTCCTACAATTGAGGAAACACAAAATGAATTTGAAGAGAATTCAAATTGCACCTCTGATGGAATTCAAGTTTCCATAGGTGAGGAAAAAACACCCAATTGCAAGATATGTGAAAATGAAGTGGATGGTGGAAAAATAAAAATATGTGGCCATCGGTTTTGCTCCAATAAATACTACCATGTAAGGTGTTTAACAATTAATCAGTTGAAGTCATATGGTCATTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAACTGATCAAGATGATGATCGGATTGTTCTGTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCGCGGACTTCTATTCCAAGAGGGAACTGGTTCTGCAGAAAATGTGATGCTGGAATACAAGCAATCCACCAGGCTAAAAAGGCATATGAGTTTAACAAGCCAAGAAGAAATGGTGAAGATGCTGCAAAGCCAAATGCCAATCTTGAAAAGAAACACAACAATAAACGTGCACGGGAATTGGAAAGTGGTGGAGCAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAAAGAGGCGGCAAGCCACATCAAGTTACAGAGAACATGA 1941 0.4096 MGTEDGTSDADKTEFDERVQCLKGAVMDGGVAIVDGNCVSEEGQLLKSEAMNVGVAIADENGVAEEGRIGKSETFCNRVAVADKGDSGGVECLQTYKRRKKSSSKGEVQEQCRKNVETSTHIADQDVTKPCDVALCNTSDDCSHGQWGNIVLKHLYQSLGDGNGGIEGCIREALIHYPKHNHTTTVMETFKIDKDGQECSLQFEPLSHRTEKEANGHADVMCNGGSSESPDHGVTEMCQRVLCNVLTSEKFSSLCKALLENFQGMKPESVLDFTVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVALAKSLSNMSRTSYSELVGIPAQSTFQDEKQVEFDCCMKPEQTQACAMYKICSCKCCGEKADDTDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCANCTANVIESLHENCVLCERLNDAKTLDDVIGDGSFPTIEETQNEFEENSNCTSDGIQVSIGEEKTPNCKICENEVDGGKIKICGHRFCSNKYYHVRCLTINQLKSYGHCWYCPSCLCRVCLTDQDDDRIVLCDGCDHAYHIYCMKPPRTSIPRGNWFCRKCDAGIQAIHQAKKAYEFNKPRRNGEDAAKPNANLEKKHNNKRARELESGGAMDMLLTAANTLNFEEKEAASHIKLQRT 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01060 646 PANTHER HISTONE ACETYLTRANSFERASE 149 634 - -
Gma06g01060 646 SMART PHD_3 475 524 IPR001965 -
Gma06g01060 646 SMART PHD_3 525 570 IPR001965 -
Gma06g01060 646 SMART PHD_3 364 411 IPR001965 -
Gma06g01060 646 SUPERFAMILY FYVE/PHD zinc finger 362 413 IPR011011 -
Gma06g01060 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 575 IPR013083 -
Gma06g01060 646 ProSiteProfiles Zinc finger PHD-type profile. 362 413 IPR019787 -
Gma06g01060 646 MobiDBLite consensus disorder prediction 588 614 - -
Gma06g01060 646 PANTHER D4, ISOFORM A 149 634 - -
Gma06g01060 646 Pfam PHD-finger 525 570 IPR019787 -
Gma06g01060 646 Pfam PHD-finger 365 412 IPR019787 -
Gma06g01060 646 Gene3D - 253 414 - -
Gma06g01060 646 ProSiteProfiles Zinc finger PHD-type profile. 522 572 IPR019787 -
Gma06g01060 646 SUPERFAMILY FYVE/PHD zinc finger 524 573 IPR011011 -
Gma06g01060 646 SUPERFAMILY FYVE/PHD zinc finger 471 523 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01060 Gma-Chr6 9919139 9925546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01060 524 592 C2H2 Transcription Factor Family AT3G01460 43.478 2.71e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma06g01060 PHD 3e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01060 - - gmx:100795906 1357.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01060 06 9919139 9925546 Gma06g01060 06 9919139 9925546 ECH
Gma14g01449 14 30986475 31006836 Gma06g01060 06 9919139 9925546 PCT
Gma06g01060 06 9919139 9925546 Gma14g01449 14 30986475 31006836 PCT