Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01052 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATCCTCAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGTCTCCGGGAAGATGCATGAATACATCAGCCCCTACACCACGTTGATTGACGTTCTGGACAGATACCAAAGAGCTTCTGGGAAGACCCTCTGGGATGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAGAAAGAGAAtgacagcatgcaaattgagctcagGCACTTGAAAGGGGAGGACATCACGTCACTCAATTACAAGGAACTGATGGCACTAGAGGATGCCCTTGAAAATGGCCTCAGTGGAGTCCGTGAGAAAAAGGCAATTTTTTTTTATATACTTATCATAGCTTTATATTTATTTGGTCAGCAAAAATTAAAAGGCAAGATTTTGGAGGAGCAAAATAAGGAACTCAGTTTCCTTCTGCAACAGCATTTGGCAGTAGAAGGAATTGGAAACATGCATGAACAATGGATTTGA 576 0.3976 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGVSGKMHEYISPYTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLSGVREKKAIFFYILIIALYLFGQQKLKGKILEEQNKELSFLLQQHLAVEGIGNMHEQWI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01052 191 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Gma06g01052 191 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 184 - -
Gma06g01052 191 Pfam K-box region 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma06g01052 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Gma06g01052 191 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gma06g01052 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Gma06g01052 191 ProSiteProfiles K-box domain profile. 84 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma06g01052 191 Coils Coil 77 111 - -
Gma06g01052 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma06g01052 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01052 Gma-Chr6 9851766 9854459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01052 1 145 MADS-box Gene Family AT5G20240 69.178 2.77e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma06g01052 K-box 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01052 K09264 - gmx:100306010 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02345 04 53882513 53885707 Gma06g01052 06 9851766 9854459 GST
Gma14g01429 14 30387870 30391601 Gma06g01052 06 9851766 9854459 PCT
Gma06g01052 06 9851766 9854459 Gma14g01429 14 30387870 30391601 PCT