Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01021 ATGGCGCAGACGACCCATCCCATGGACATCGACGACCACACTTACACCGCCAGTCCTGACAAGGGCAAAAGTGTCGTCTTCGCCGGAAACCCTCCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATACCGCCCTCAGTCCCTCGACGACGTCGCTGCTCACCGTGACATTGTCGATACAATTGATAGGCTAACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTTGCTGTGGCACGCAAACTGTATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCCGATGATAGAGGAATTGATGTCGTGCGCCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAATTGGTATTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCGCTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCCGAAGGGCTTGATGTTGAGGACAGTGGCTTAGCAGCTTTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCAAAAGACATTGAGCTAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACAAGGAAAGGGTTGGCCCTGATTGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTGCGAGTACAGTTGATGAATGATTTGGCAGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1086 0.4448 MAQTTHPMDIDDHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01021 361 Gene3D - 200 261 - -
Gma06g01021 361 PANTHER REPLICATION FACTOR C SUBUNIT 5 31 357 - -
Gma06g01021 361 Pfam Replication factor C C-terminal domain 262 348 IPR013748 -
Gma06g01021 361 MobiDBLite consensus disorder prediction 1 24 - -
Gma06g01021 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 255 IPR027417 -
Gma06g01021 361 Pfam ATPase family associated with various cellular activities (AAA) 74 194 IPR003959 GO:0005524|GO:0016887
Gma06g01021 361 SUPERFAMILY post-AAA+ oligomerization domain-like 262 352 IPR008921 GO:0003677|GO:0006260
Gma06g01021 361 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 31 357 - -
Gma06g01021 361 Gene3D - 262 359 - -
Gma06g01021 361 CDD AAA 58 196 - -
Gma06g01021 361 SMART AAA_5 70 200 IPR003593 -
Gma06g01021 361 CDD HLD_clamp_RFC 197 259 - -
Gma06g01021 361 Gene3D - 33 196 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01021 Gma-Chr6 9535078 9542788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01021 1 360 Core DNA Replication Machinery Family AT1G77470 78.649 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01021 K10756 - gmx:100782652 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02376 04 54145804 54152410 Gma06g01021 06 9535078 9542788 GST