Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01019 ATGAGTCAAGAGTTTGAAACCGACCTTCGATTTCTTGAAGGTGAAAGAAGTAATGACGATGGCGATGAAGACATGGAAATGGAAGAAGATGAGATTGATCTAGATGAATTATCTTATGAAGAATTGATGGAGTTGGAAGAGTTTATAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACTTGCCAATGTGCTGAAAGCAAAAGTGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCGCTGGTGGCACTTCAATGTGAGCACCCTTATCATTCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTGTCAACTCCCAACATGACTTCGAATCCTTAG 408 0.3922 MSQEFETDLRFLEGERSNDDGDEDMEMEEDEIDLDELSYEELMELEEFIGEETRGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCISKWLQIKKVCPICSNEVSTPNMTSNP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01019 135 SUPERFAMILY RING/U-box 38 129 - -
Gma06g01019 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 131 IPR013083 -
Gma06g01019 135 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 131 IPR045191 GO:0061630
Gma06g01019 135 Pfam Ring finger domain 81 122 IPR001841 -
Gma06g01019 135 MobiDBLite consensus disorder prediction 1 27 - -
Gma06g01019 135 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 3 131 - -
Gma06g01019 135 ProSiteProfiles Zinc finger RING-type profile. 82 123 IPR001841 -
Gma06g01019 135 SMART ring_2 82 122 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01019 Gma-Chr6 9520181 9520588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01019 29 126 C3H Transcription Factor Family AT3G63530 48.515 6.47e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01019 K19045 - gmx:100526881 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02378 04 54161587 54164739 Gma06g01019 06 9520181 9520588 GST
Gma06g01019 06 9520181 9520588 Gma14g01408 14 29903522 29904709 PCT