Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00987 ATGGCCGAGACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCACAAAGGTTTCGGATTCATAACTCCCCAAGATGGAACCGATGATCTCTTCGTGCACTTCACTTCCATCCGATCCGACGGCTACCGTTCTTTGTCCGACGGTCAGTCCGTTGAGTTTCTCCTCGATTACGGCGACGACGGCCGCACCATGGCCGTCGACGTCACCTCAGCCGTTAGATCTCGTCTTCCCGGAGGATTTCGCGGCGGCGGCGGTGGGAGGGGCAGAGGAGGAGGACGCTACGGGGGCGGGGAAGGCCGTGGCAGAGGGTTCGGTCGGAGAGGAGGAGGCCCTgagtgttataactgtggaagaataggtcacttggcaagggattgttacCATGGACAGGGTGGTGGTGGTGGTGATGATGGTAGGAATCGGAGACGCGGCGGTGGTGGTGGAGGAGGAGGAGGGtgttttaactgtggggaggaagggcattttgcgagggaatgtccgaatgttggaaaaGGAAATGAGTGA 531 0.4934 MAETRRSTGTVKWFNAHKGFGFITPQDGTDDLFVHFTSIRSDGYRSLSDGQSVEFLLDYGDDGRTMAVDVTSAVRSRLPGGFRGGGGGRGRGGGRYGGGEGRGRGFGRRGGGPECYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFARECPNVGKGNE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00987 176 ProSiteProfiles Zinc finger CCHC-type profile. 155 170 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 171 - -
Gma06g00987 176 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Gma06g00987 176 ProSiteProfiles Zinc finger CCHC-type profile. 115 128 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Gma06g00987 176 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Gma06g00987 176 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Gma06g00987 176 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Gma06g00987 176 MobiDBLite consensus disorder prediction 79 105 - -
Gma06g00987 176 Pfam Zinc knuckle 114 128 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 Pfam Zinc knuckle 154 170 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 Gene3D - 1 71 IPR012340 -
Gma06g00987 176 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Gma06g00987 176 SMART csp_8 8 73 IPR011129 GO:0003676
Gma06g00987 176 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Gma06g00987 176 SUPERFAMILY Retrovirus zinc finger-like domains 105 171 IPR036875 GO:0003676|GO:0008270
Gma06g00987 176 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Gma06g00987 176 Gene3D - 147 176 - -
Gma06g00987 176 Gene3D - 107 146 - -
Gma06g00987 176 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00987 Gma-Chr6 9215865 9216890 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gma06g00987 CSD 4.3e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00987 - - gmx:100815773 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02409 04 54460150 54460630 Gma06g00987 06 9215865 9216890 GST