Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00936 ATGGTTAAGCATGCGGCACTGGCAGTGAGTGAAGTGACCCTTTTATCCTCCCTGGCCCCGCCGGTCACCCCGTTCTGGGCCCACTCCGGTGATAGGGTGCTATATAACAGAGAGACTCCGAAAGCCAAAACCAAGAGTGGCGAGAGAAAGACGCAGGTTGAATTAATTAGTATCATGGCAGCTTTGATGGATTTTTACAGCAGCAGCCCAGAGTTTCAACTTCACTCAGATCCATTCAGGGGAGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCTCCCAACTATTTCCCTTCCTCCCCCTCCCTCCCTAATCTTTACTCAAACGGGTTATCCAGCAACACCCAAAGCTTAATTGGCTTCGGGCAAGCGCAACCCACATCTCTTGTGGGCCTGAACCACCTAACCCCATCTCAGATCTCTCAGATCCAAGCCCAAATCCAGATCCAGGCCCAGCAGCATCAGAATCGCAGCAACACCCTGAGCTTCCTTGGGCCGAAGCCCATCCCCATGAAGCACGCGGGCATGCCTCCGAAGCCCACGAAGCtttacagaggggtgagacagaggcactggggaaagtgggtggctgagatcagacttcccaagaaccggaccaggctgtggctgggaaccttcgacaccgccgaggaagccgctctggcatacgacaaggccgcgtacaagctccgaggtgacttcgccaggctcaacttcccaaacctgcGACACCAGGGTTCCTCCGTCGGTGGTGATTTCGGGGAGTACAAGCCTCTTCATTCCGCTGTTGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCCGAGGAAGTCGCGTTCCAAACTCGCGGAGAAGGTTGTTTCCGACAAGGAGAACAACAACTCTTGTAAGGTGGAAGCTGCGTCCTGGTCGTCGGAAGGTTCTTCGCCGCTTTCGGATCTGACGTTTGCTGACGTGAGCGAGGCTCAGTGGGAAGGTGATTCGGATAATTATAATCTCCAGAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTGTGA 1083 0.4404 MVKHAALAVSEVTLLSSLAPPVTPFWAHSGDRVLYNRETPKAKTKSGERKTQVELISIMAALMDFYSSSPEFQLHSDPFRGELMEVLEPFMKSPSPNYFPSSPSLPNLYSNGLSSNTQSLIGFGQAQPTSLVGLNHLTPSQISQIQAQIQIQAQQHQNRSNTLSFLGPKPIPMKHAGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEKPPRKSRSKLAEKVVSDKENNNSCKVEAASWSSEGSSPLSDLTFADVSEAQWEGDSDNYNLQKYPSYEIDWDSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00936 360 PRINTS Ethylene responsive element binding protein signature 208 224 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 PRINTS Ethylene responsive element binding protein signature 186 197 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 SUPERFAMILY DNA-binding domain 185 243 IPR016177 GO:0003677
Gma06g00936 360 Pfam AP2 domain 186 234 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 SMART rav1_2 185 248 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 MobiDBLite consensus disorder prediction 280 325 - -
Gma06g00936 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 59 359 - -
Gma06g00936 360 ProSiteProfiles AP2/ERF domain profile. 185 242 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 MobiDBLite consensus disorder prediction 307 325 - -
Gma06g00936 360 MobiDBLite consensus disorder prediction 280 306 - -
Gma06g00936 360 CDD AP2 184 244 IPR001471 GO:0003700|GO:0006355
Gma06g00936 360 Gene3D AP2/ERF domain 185 243 IPR036955 GO:0003700|GO:0006355
Gma06g00936 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 59 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00936 Gma-Chr6 8666628 8670071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00936 59 360 AP2-EREBP Transcription Factor Family AT1G78080 52.149 1.56e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g00936 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00936 K09286 - gmx:100800478 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00936 06 8666628 8670071 Gma06g00936 06 8666628 8670071 ECH
Gma04g00957 04 9886883 9888635 Gma06g00936 06 8666628 8670071 GST
Gma14g01716 14 46527958 46529317 Gma06g00936 06 8666628 8670071 PCT
Gma06g00936 06 8666628 8670071 Gma14g01716 14 46527958 46529317 PCT