Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00891 ATGGCGCTACTACGTCTTGTTTGCTTACCTTCAACAAATCAATTATCCACTCAACCCCATTCCCATTCCCAATCCACCTCTTTCTCTTTTCTTCGCAAAACGCCCCATTCTCAACCCATCAATTTCAGTCTCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCACAACCAAACAAACCCTTAACCTCACTCCCACACATTCCTCCACTTCCGAACAACAAACCGAGGAGCCTCTTGTCTCTGAAGAAGAATTTTCTCGCACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCTGAAGACATTCGCACCCTCTTCGAAAAACATGGGAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAGGCACTGGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATTAAAGTCAATTATGCTCGGCCAAAAAAGGAGAAAACAGCGCCGCCCCCTGTGAAACCAAAGGTGGTGACGTTTAACTTGTTTGTTGCTAACTTATCCTATGAAGCAAGCTCCAAAGATCTTAAGGAGTTTTTTGATTTGGGAACTGGTAGAGTTGTCTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGATATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGTTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGTTTTGTTCAACAACCAGGGGACGGGAGTGCAAAGTCTGAAGATACTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTCCACAACCAGCAGAGGGGAGTGCAAAGTCTGAAGATACTCCTTCTGAGTTGAGTGTGAATGGGGAAGAAGCTGACAAAGCTGATTGA 948 0.4662 MALLRLVCLPSTNQLSTQPHSHSQSTSFSFLRKTPHSQPINFSLSSFHFPRLSLITTKQTLNLTPTHSSTSEQQTEEPLVSEEEFSRTRLLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTAPPPVKPKVVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSELSVNGAEAPQPAEGSAKSEDTPSELSVNGEEADKAD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00891 315 SMART rrm1_1 183 257 IPR000504 GO:0003723
Gma06g00891 315 SMART rrm1_1 89 161 IPR000504 GO:0003723
Gma06g00891 315 MobiDBLite consensus disorder prediction 63 83 - -
Gma06g00891 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Gma06g00891 315 MobiDBLite consensus disorder prediction 259 315 - -
Gma06g00891 315 PANTHER OS08G0483200 PROTEIN 1 287 - -
Gma06g00891 315 Gene3D - 57 172 IPR012677 -
Gma06g00891 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Gma06g00891 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 159 IPR000504 GO:0003723
Gma06g00891 315 SUPERFAMILY RNA-binding domain, RBD 181 265 IPR035979 GO:0003676
Gma06g00891 315 SUPERFAMILY RNA-binding domain, RBD 70 173 IPR035979 GO:0003676
Gma06g00891 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Gma06g00891 315 CDD RRM_SF 184 257 - -
Gma06g00891 315 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 287 - -
Gma06g00891 315 MobiDBLite consensus disorder prediction 269 283 - -
Gma06g00891 315 Gene3D - 174 288 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00891 Gma-Chr6 8229617 8231949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00891 88 264 Eukaryotic Initiation Factors Gene Family AT3G16380 30.208 8.14e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00891 - - gmx:100790439 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00891 06 8229617 8231949 Gma06g00891 06 8229617 8231949 ECH
Gma04g00905 04 9081910 9084149 Gma06g00891 06 8229617 8231949 GST