Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00889 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTTGCGTATGGTTGCAACAAGGATTATTTGTACTCCTTAGTTGGAGCAACACCCACCTACGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACCTTTATGCAAATTGGGATTCATCTTCTACCTCAATGTTGCAAAATGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGAACAATCCGTGACAACCCCTTCTTTTCCTCCTTCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACCACCACGAGCCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACGCACATTGCTGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCCTCTTATGTTCAAAGGGGTGACCAAGCCTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGCCAAAAGAGAACGAACCAAGGGAAAGAGAATGTTGTTGGGTTAAATGGGACGTCGACAACAACAACAACAACACCCTTTGCTGAGTTCTTCGCGTTTCCTCAATACACGACACGTGGTACGACGATGGCACAGAACAACCAGGAGCAGAAACAGTGGGCCGTAGCAGACATTGAAGTGACCATGGTGGATAACCATGCCAATCTAAAGGTACTATCAAAGAAACAACCTGGGCAGATTATGAAGATCGTTGTTGGGCTTCAAAGTCTCAAGCTCAGCATTCTCCACCTTAATGTTTCCACTCTTGATGATATGGTCCTTTACTCAGTTAGCGTCAAGGTAGAGGACGGGTGTCTGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA 1005 0.4756 MALEAVVFPQDPFAYGCNKDYLYSLVGATPTYGNFQAAEEEKVLLGIINNNIEHNLYANWDSSSTSMLQNVKEQQWDSHSSPEACTVEQSVTTPSFPPSPPPSSSVEATVTTTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQGKENVVGLNGTSTTTTTTPFAEFFAFPQYTTRGTTMAQNNQEQKQWAVADIEVTMVDNHANLKVLSKKQPGQIMKIVVGLQSLKLSILHLNVSTLDDMVLYSVSVKVEDGCLLNTVDEIAAAVNQLLRTIQEVTFS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00889 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Gma06g00889 334 PANTHER MAX DIMERIZATION, MAD 1 330 - -
Gma06g00889 334 Gene3D - 122 199 IPR036638 GO:0046983
Gma06g00889 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 197 IPR036638 GO:0046983
Gma06g00889 334 Coils Coil 180 200 - -
Gma06g00889 334 CDD bHLH_AtFAMA_like 135 198 - -
Gma06g00889 334 ProSiteProfiles ACT domain profile. 259 334 IPR002912 -
Gma06g00889 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 330 - -
Gma06g00889 334 SMART finulus 138 189 IPR011598 GO:0046983
Gma06g00889 334 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Gma06g00889 334 MobiDBLite consensus disorder prediction 71 129 - -
Gma06g00889 334 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00889 Gma-Chr6 8217394 8219276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00889 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.470 5.85e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g00889 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00889 - - gmx:100789380 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00889 06 8217394 8219276 Gma06g00889 06 8217394 8219276 ECH
Gma04g00903 04 9055281 9057135 Gma06g00889 06 8217394 8219276 GST
Gma14g01774 14 47846886 47850170 Gma06g00889 06 8217394 8219276 PCT
Gma02g01997 02 45406441 45410051 Gma06g00889 06 8217394 8219276 PCT
Gma06g00889 06 8217394 8219276 Gma14g01774 14 47846886 47850170 PCT
Gma06g00889 06 8217394 8219276 Gma02g01997 02 45406441 45410051 PCT