Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00888 ATGACCACTCTCACACACTCCAATTTCCACCATGACCTTCTTCTTCTTTTCTATTTTTTTCTCCTCACCGAATTTCCGTCGCCGCTCACCGCGCAGCTTCCGGACACGCTAACTCCGCCGTCTCCGCAGCAGCAGGAGGACCGTTTTGCGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGGTGATCCTCGTGGCGGTGTTCTTCGTCCTAGGGTTCCTCTCCGTGTACACTCGCCAGTGCGCGGAGCGCAGGATGCGAGGGAGGTTCGACATCTCCATCTCCATCTCGCGCCGGCAACGCGGCCTGGACCGCGAAATCATCGAAACGTTCCCAACGTTCGTGTACTCCACCGTAAAGAGCCTCAAGTTAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCGAGGAGGTCGAAACGCTGCGTTTCATCCCAAATTGCAGCCACGTGTTCCACTCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTGTGTCGCGCCAATCTTTTTCCCAAACCTGATGACCCGTCTTTTGATCCTATCCAAATTCCGGATCCGGAACAACCCGTTATATCATCACCGACCCGAGCCGAAACTGGGGGCTCTAATCCTCGTTCTCCGAATTTGATTGATCAGAACCCTACGTCGCGGTCAAGGTCAACGGGTTTTCGTATCGCGGGGTGGTTTCCGCGGTCTCACTCGACGGGTCACTCGCTGGTTCAACCCGGGGAGAATTGTGAACGGTTTACGCTGCATTTGCCTGAGGAAGTGCGGAACCAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGGGCGTGACGTTCACGCGCGAGAACAGTGAAAGGAGGGGTTATAGGGCGAGGAGCGTTGGTAGTAGCCTCAGCCCTCACGTGAGGGGGTGGTTTTCTGTGAAGGATGATGTCGGGGAAAGGTCTTCGGATCGGTTATTCTCCACGTCGACAAGGGATAGTGAGGTTTAG 1005 0.5612 MTTLTHSNFHHDLLLLFYFFLLTEFPSPLTAQLPDTLTPPSPQQQEDRFARLKFDKSMAIVLVILVAVFFVLGFLSVYTRQCAERRMRGRFDISISISRRQRGLDREIIETFPTFVYSTVKSLKLGRATLECAVCLNEFEEVETLRFIPNCSHVFHSECIDAWLANHSTCPVCRANLFPKPDDPSFDPIQIPDPEQPVISSPTRAETGGSNPRSPNLIDQNPTSRSRSTGFRIAGWFPRSHSTGHSLVQPGENCERFTLHLPEEVRNQLMLSRTKSCGVGVTFTRENSERRGYRARSVGSSLSPHVRGWFSVKDDVGERSSDRLFSTSTRDSEV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00888 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Gma06g00888 334 MobiDBLite consensus disorder prediction 184 229 - -
Gma06g00888 334 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gma06g00888 334 PANTHER RING FINGER DOMAIN-CONTAINING 13 280 - -
Gma06g00888 334 Pfam Ring finger domain 131 174 IPR001841 -
Gma06g00888 334 SUPERFAMILY RING/U-box 131 183 - -
Gma06g00888 334 SMART ring_2 132 173 IPR001841 -
Gma06g00888 334 CDD RING-H2_PA-TM-RING 131 174 - -
Gma06g00888 334 MobiDBLite consensus disorder prediction 196 229 - -
Gma06g00888 334 PANTHER RING-H2 FINGER PROTEIN ATL11 13 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00888 Gma-Chr6 8199024 8200644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00888 1 297 Rapid Response to Elicitors AT3G05200 39.877 4.47e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00888 K10664 - gmx:100805815 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00888 06 8199024 8200644 Gma06g00888 06 8199024 8200644 ECH
Gma04g02179 04 52231260 52231963 Gma06g00888 06 8199024 8200644 GST
Gma14g01780 14 47934137 47935276 Gma06g00888 06 8199024 8200644 PCT
Gma02g01999 02 45448221 45449345 Gma06g00888 06 8199024 8200644 PCT
Gma06g00888 06 8199024 8200644 Gma14g01780 14 47934137 47935276 PCT
Gma06g00888 06 8199024 8200644 Gma02g01999 02 45448221 45449345 PCT