Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00880 ATGAGGAAGAAAAGGAAAGGAAGCAAAACTGATGGGTCTGCGGATCTGGCTGTTATTTTGGCTCCTAATCATGGCTCTGCTTCGTCGAATTTGAAGTCCCATTACTCGCTGGAAGATTGTTGTAGGCTGAAGAAGAGGTGTTGTAAGGAGGAGGATGCTGACACTGAGCCGGCTACTTCCTTTACGAGGAGGCTTGCTGGCATTGCTACTGCCCCACCTTGTGGGACGTCGTCTTTGATCACGCCGGGGAGAGGGCTCAAGAGGAAGATAGGTTGCATTGATGTTGCTACCCAGATGGGCAGGAAGAAGAAGATCGAGGATGATTATGTTTCTGGGGAGACAATCGGGCAAGGCAAGTTCGGGTCTGTTTGGTTGTGTAGGTCAAAGGTTAGTGGAGCTGAATATGCGTGTAAGACCCTGAAGAAAGGGGAGGAGACGGTTCATCGAGAGGTTGAGATCATGCAACACTTATCCGGACATTCTGGGGTTGTTACACTGCAAGCTGTTTATGAGGAAGCTGAATGCTTTCATCTTGTGATGGAACTGTGCTCTGGTGGTCGGCTCATCGATGGGATGGTTAAGGATGGTCTGTATTCGGAACAGCGGGTTGCTAATGTACTCAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCCGAGAATATTCTCCTCACTGCATCCGGAAAAATAAAGCTTGCAGATTTCGGCTTGGCCATGAGAGTTTCCGAAGGTCAGAACTTGACTGGTTTGGCAGGAAGCCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACTGTCAAATTAGATTTCCAAAATGGAATGTGGAAATCAATATCTAAACCTGCACAAGACCTTATTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATATCAGCTGAAGAAGTACTTAGGCATCCATGGATATTGTTCTACACGGCAAATACATTGAAAATGCTGCCCATCAAAACAAAATTGAAGAACCAAATTGGTGCCACATGCCAACAGCTTGTTGCTGTAAGGGAACCAAGGTTAGGAGGAAATAGGATAGATAATTACTCACTTAGCGAGGGTTCGTCCTCTGAAAGTTGCTATTCAGATGATCAGGATGAATGTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCACACGTGAGGATATCTGAACCAAAGAGGAGCAGGGTGTGTGGTCCCACAGGCCCGATAGTTCAACAAGGTTCATCTAACATGAAGCCTAACAACCTCTGTAAAGCATTTTGA 1404 0.4594 MRKKRKGSKTDGSADLAVILAPNHGSASSNLKSHYSLEDCCRLKKRCCKEEDADTEPATSFTRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVSGETIGQGKFGSVWLCRSKVSGAEYACKTLKKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAECFHLVMELCSGGRLIDGMVKDGLYSEQRVANVLKEVMLVIKYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRVSEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQNGMWKSISKPAQDLIGRMLTRDISARISAEEVLRHPWILFYTANTLKMLPIKTKLKNQIGATCQQLVAVREPRLGGNRIDNYSLSEGSSSESCYSDDQDECVLIDVLASAISHVRISEPKRSRVCGPTGPIVQQGSSNMKPNNLCKAF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00880 467 CDD STKc_CAMK 108 356 - -
Gma06g00880 467 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Gma06g00880 467 SUPERFAMILY Protein kinase-like (PK-like) 100 374 IPR011009 -
Gma06g00880 467 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 459 - -
Gma06g00880 467 Pfam Protein kinase domain 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g00880 467 Gene3D Transferase(Phosphotransferase) domain 1 100 400 - -
Gma06g00880 467 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 459 - -
Gma06g00880 467 ProSiteProfiles Protein kinase domain profile. 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g00880 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Gma06g00880 467 SMART serkin_6 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00880 Gma-Chr6 8147692 8151812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00880 101 357 EF-hand Containing Proteins AT4G35310 43.820 8.27e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma06g00880 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00880 - - gmx:100788327 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00880 06 8147692 8151812 Gma06g00880 06 8147692 8151812 ECH
Gma04g00891 04 8944166 8946495 Gma06g00880 06 8147692 8151812 GST
Gma14g01786 14 48082080 48085264 Gma06g00880 06 8147692 8151812 PCT
Gma02g02005 02 45531962 45535032 Gma06g00880 06 8147692 8151812 PCT
Gma06g00880 06 8147692 8151812 Gma14g01786 14 48082080 48085264 PCT
Gma06g00880 06 8147692 8151812 Gma02g02005 02 45531962 45535032 PCT