Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00872 ATGTTCGGCTCCATGAACAAGATCGTCTCCGCTGAAGACACcgacggctccgtctccgaccaccacatccattacagttcccacaccatcgaagacgacggcgccgcctccgatcaccacatccattacagttcccacaccatcgaagaggacggcgccgtctccaaccaccacatccattacagttcccacaccatcgaagaagacggcgGCGCCACTGTCGAAGAGGTTTCCGCCGTTCCGCCCCTTGAAATCTCTATCAACGATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGACGCTGTTACACCTGATAAGGCACTTTTTTTCTTCTTCTCTTTTATAATCACTGTTCAAGCAGTGTTGTTGCTGTTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCAAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACAGCGAGCAGCGTCATTGAATAGGTTTCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCTGAAACCTTGTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAGGGGGCCATCTGGTCCAAGGTCACtttgcaatgcttgtgggcttttttgggcaaataggGGCACTTTGAGGGATCTTTCTAAGAGAAACCAGGAACACTCTCTTGCACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGACTTTGACTGTCGGAGTGGCATCCCTGCACAACATAACAATCTTGTTAATGATAACAAAGCTTTGGAGAAACAACTTTCCATTCACGACACGCTCACGCCGTCAAACCAACTTGAGTGCGTTCCAGGAAACACATCCCCTCTCCATTTCATTCACTTCTCTGCTCTCTCTTTCTCCCACGAATTCCCAAACTTATTTTCACGCTTCCAATTTCCGTCACGTAAACCATGCATCACCGCCTCCCAAATTAGGGTTTCCGACAGGCGCGTGGAGGAATCGATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCTGCTATACCCGTCGACGACGATGACGACGACGACGACGGCGGTGATGATGACGCTATGGATGACTTGGAGGATGCGAATGTTAATTCAGTGAACGTTGCTGCTAATGCCGCGGCGAGTGTAAATCATGAAGCGGTAGTGGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGCGAGGTTTATGTCTTTCCCGCTATCACTCCTCAGAAGGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGGGTGCCTGCTGTTGAACAACCATTTGACCAAAGTAACAGGGGCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTAGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTCAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGATGGCACTTCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTTAGAGATCTCAGTAAGGGCGGAAGGAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTTCTTGAAGGGGAATTGCCAGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCGGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACGTTCTGCCACTGGGAATTGGGCATTCTTCAACAAATGAGAATGAACAGGAACCTCTGGTCGAGCTTTCTAATCCTTCAGATACAGATATTGATATTCCAGGAAACTTTGATTAG 2217 0.4272 MFGSMNKIVSAEDTDGSVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGAVSNHHIHYSSHTIEEDGGATVEEVSAVPPLEISINDSSQLTLSFRGQVYVFDAVTPDKALFFFFSFIITVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNNDFDCRSGIPAQHNNLVNDNKALEKQLSIHDTLTPSNQLECVPGNTSPLHFIHFSALSFSHEFPNLFSRFQFPSRKPCITASQIRVSDRRVEESMATVNPQPLQFEDPAIPVDDDDDDDDGGDDDAMDDLEDANVNSVNVAANAAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAITPQKVQAVLLLLGGRDVQARVPAVEQPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQDGTSHSESVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNENEQEPLVELSNPSDTDIDIPGNFD 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00872 738 CDD ZnF_GATA 587 631 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 MobiDBLite consensus disorder prediction 550 585 - -
Gma06g00872 738 Gene3D - 223 281 IPR013088 GO:0006355|GO:0008270
Gma06g00872 738 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Gma06g00872 738 MobiDBLite consensus disorder prediction 705 724 - -
Gma06g00872 738 MobiDBLite consensus disorder prediction 199 223 - -
Gma06g00872 738 ProSiteProfiles GATA-type zinc finger domain profile. 226 284 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 ProSiteProfiles CCT domain profile. 164 206 IPR010402 GO:0005515
Gma06g00872 738 ProSiteProfiles GATA-type zinc finger domain profile. 582 641 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 MobiDBLite consensus disorder prediction 389 423 - -
Gma06g00872 738 ProSiteProfiles CCT domain profile. 517 559 IPR010402 GO:0005515
Gma06g00872 738 Pfam CCT motif 164 206 IPR010402 GO:0005515
Gma06g00872 738 Pfam CCT motif 517 558 IPR010402 GO:0005515
Gma06g00872 738 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 388 738 - -
Gma06g00872 738 CDD ZnF_GATA 232 277 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 Pfam GATA zinc finger 232 268 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 Pfam GATA zinc finger 588 624 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 MobiDBLite consensus disorder prediction 558 581 - -
Gma06g00872 738 ProSiteProfiles Tify domain profile. 449 484 IPR010399 -
Gma06g00872 738 MobiDBLite consensus disorder prediction 197 223 - -
Gma06g00872 738 PANTHER GATA TRANSCRIPTION FACTOR 28 57 286 IPR045280 GO:0006355
Gma06g00872 738 PANTHER GATA TRANSCRIPTION FACTOR 28 388 738 IPR045280 GO:0006355
Gma06g00872 738 MobiDBLite consensus disorder prediction 402 423 - -
Gma06g00872 738 MobiDBLite consensus disorder prediction 670 688 - -
Gma06g00872 738 ProSitePatterns GATA-type zinc finger domain. 232 259 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 ProSitePatterns GATA-type zinc finger domain. 588 615 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 583 632 - -
Gma06g00872 738 SMART tify_2 449 484 IPR010399 -
Gma06g00872 738 SMART tify_2 86 132 IPR010399 -
Gma06g00872 738 SMART GATA_3 226 279 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 SMART GATA_3 582 635 IPR000679 GO:0006355|GO:0043565
Gma06g00872 738 Pfam tify domain 90 112 IPR010399 -
Gma06g00872 738 Pfam tify domain 451 483 IPR010399 -
Gma06g00872 738 MobiDBLite consensus disorder prediction 626 738 - -
Gma06g00872 738 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 277 - -
Gma06g00872 738 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 57 286 - -
Gma06g00872 738 Gene3D - 582 635 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00872 Gma-Chr6 8034886 8049747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00872 450 630 Tify Gene Family AT4G24470 53.297 4.05e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma06g00872 CCT 2.7e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00872 - - gmx:100784257 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00883 04 8772501 8791261 Gma06g00872 06 8034886 8049747 GST