Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00842 ATGGAATTTGACGAGCACGAGGACCAAGAGCAAGAGGAGGAGGAGGAGGAGGAAATGGGATTCTCAGTGGCGGCGGCGGCGAGTTACGACTCGCTGGGAAACGCCGCGGTGAGGTCTAAAATTAGCGGCGGCGATGGTGTTGCGGCCACCGTGAATTCcggtcgcaaagggacggtgagatacagagaatgtcagaagaaccatgccgtcagcatcggcggccacgccgtcgacggatgctgcgagttcttggctgccggagaggaaggcacgctggaagccgtaatttgcgccgcctgtaactgccaccgcaacttccaccgcaaggagatcgacggcgaaaccagcccttaccagcaccgttcgcagccacagcctcagcctctgcaccctcagtaccaCCACCAATTCTCCCCTTACTACCACCGCGCGCCCCCACCTTCCGCCGCCGGATATCTCCACCACCACCTTGTAACACCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCACCGTTAGCTTCTGGAGGAGTGTTCAGTAGGGAGGAAGAGGACATGTCAAACCCCAGCTCCAGCGGCGGCGGCGGTGGTGGCGGTTTTAGTGGCGGTGGTGGTAGCGGGAGTGGAACGAAGAAGAGGTTTAGAACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTTGAACAATTCTGCGCTGAAACTTGCATCAAGAGACATGTACTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACATTCGGCTGGGAATGGATCGAATCACTTGAACAGCACCACAATAATTGAGAATTCTCAATTCTCCTGA 894 0.3937 MEFDEHEDQEQEEEEEEEMGFSVAAAASYDSLGNAAVRSKISGGDGVAATVNSGRKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYQHRSQPQPQPLHPQYHHQFSPYYHRAPPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGGFSGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCIKRHVLKVWMHNNKHTLANSEQHSAGNGSNHLNSTTIIENSQFS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00842 297 MobiDBLite consensus disorder prediction 1 24 - -
Gma06g00842 297 Gene3D - 200 274 - -
Gma06g00842 297 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g00842 297 SUPERFAMILY Homeodomain-like 198 269 IPR009057 -
Gma06g00842 297 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Gma06g00842 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 271 - -
Gma06g00842 297 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Gma06g00842 297 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 211 267 IPR006455 -
Gma06g00842 297 MobiDBLite consensus disorder prediction 181 211 - -
Gma06g00842 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 271 - -
Gma06g00842 297 MobiDBLite consensus disorder prediction 273 297 - -
Gma06g00842 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00842 Gma-Chr6 7773794 7775591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00842 13 270 ZF-HD Transcription Factor Family AT4G24660 49.615 3.30e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma06g00842 ZF-HD_dimer 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00842 - - gmx:100820567 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00842 06 7773794 7775591 Gma06g00842 06 7773794 7775591 ECH
Gma04g00853 04 8391932 8393244 Gma06g00842 06 7773794 7775591 GST
Gma14g01791 14 48217773 48221303 Gma06g00842 06 7773794 7775591 PCT
Gma02g02010 02 45585873 45592092 Gma06g00842 06 7773794 7775591 PCT
Gma06g00842 06 7773794 7775591 Gma14g01791 14 48217773 48221303 PCT
Gma06g00842 06 7773794 7775591 Gma02g02010 02 45585873 45592092 PCT