Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00824 ATGTCCGGCCCAGGGGTACAGTTGCACATCCAAGATCACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATGTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTTGCAAGAATGTGGGATCATTCACTAGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACCTAAATGGATGGCCAGATTTTGATATTAGTGAAACAAGGATCACTTTCAAGCTTAGGAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGGTTATGCCTTTTCCTGAAGATCGGTTAGCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGgtggatgacaagtatcagtattcatgtgtaaacatgaataatcgagtccatgggtggATATCTTTCAGTCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCGCATGTAGGCCCTACCACGCTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCCGGAGCAGTTGGTGATAACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAACGGGGCAATGTCAGTGGCAGATTACTTGTCTTAGACAGGTATGTCTGCACAGACTTAATACCAGCAAATAGTGCTTATGTTGGCTTAGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAAAATGGATTTTTTACTATTAAAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTATGAAGATAACATCAGGTTCTTACATTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTTATGCTCCTGATCCCAGTCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGATAGGTATTCAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTATGCACAGGCTCCGAGGAAAAAAGTGGATAACACTCTTCAAGGAACAACTTGGCAAATCAAGTTCGAAATCTGTAGTGTTGTTAAAGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCCAATGCAAGGCGACCCGTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCAAGGGATCTATTGGCTGTACCATGTGAATATACCAGGTAAACCTTCCGACCCAACAAAAGCCCGTCGAGAAGCTAGTACCACCATGTCGTCGCCGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTGTGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTCTCTCGCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCATATGCAATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAACTTAGAAAGGACAAATTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGAAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGgtggatgacaagtaccaatattcatgtgacaacaaagatagccaagttcatggatggATCTGCATGGATCCCGCAGTTGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAACTGACCCCCTTAAGCTatgggaagacgctaaactacagATGTCGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAGAGCGGACGATGATGGCTACTTCTCCGTCAGCAATATACGTGCTGGAGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATCAACATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGCGTGAACAAAAGCAGTAGCTATAAACTGAGAGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGGCATACCTGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGAAATGGTCCATTTCAGGCCATCATGTATGATTATATTCGTTTGGAAGCTCCACCGTCGTCTAGCTTCAACAAGAAAAATTGA 3768 0.4098 MSGPGVQLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGMFDVIKGTCFKVIVQNEEQVELSFARMWDHSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDISETRITFKLRKDKFQYMAMADNRQRVMPFPEDRLAGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCVNMNNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKFRGGESWKKVFGPVYIYLNSGAVGDNPLWLWEDAKIQMMNEVQSWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVCTDLIPANSAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIKNVRPGDYNLFAWVPGFVGDYKFGDFMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPSPQHINKLFINHPDRFRQYGLWDRYSELYPDADLVYTIGVSDYTKDWFYAQAPRKKVDNTLQGTTWQIKFEICSVVKGSTYKLRVAIASATLAELQIRVNDPNARRPVFTSGLIGRDNSIARHGIQGIYWLYHVNIPGKPSDPTKARREASTTMSSPGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTDPLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFIGDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVGIPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEAPPSSSFNKKN 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00824 1255 Pfam Rhamnogalacturonate lyase family 608 815 IPR010325 -
Gma06g00824 1255 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Gma06g00824 1255 CDD RGL4_M 331 430 IPR029413 -
Gma06g00824 1255 SUPERFAMILY Starch-binding domain-like 989 1039 IPR013784 GO:0030246
Gma06g00824 1255 SUPERFAMILY Galactose mutarotase-like 620 906 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma06g00824 1255 Gene3D - 945 1037 - -
Gma06g00824 1255 Gene3D - 328 418 - -
Gma06g00824 1255 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma06g00824 1255 SUPERFAMILY Starch-binding domain-like 331 411 IPR013784 GO:0030246
Gma06g00824 1255 Gene3D - 618 910 IPR014718 GO:0030246
Gma06g00824 1255 Gene3D - 6 307 IPR014718 GO:0030246
Gma06g00824 1255 Gene3D - 1053 1244 - -
Gma06g00824 1255 Gene3D - 438 607 - -
Gma06g00824 1255 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 606 1249 - -
Gma06g00824 1255 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 598 - -
Gma06g00824 1255 SUPERFAMILY Galactose-binding domain-like 1052 1244 IPR008979 -
Gma06g00824 1255 SUPERFAMILY Galactose-binding domain-like 437 598 IPR008979 -
Gma06g00824 1255 CDD RGL4_C 442 597 - -
Gma06g00824 1255 Pfam Polysaccharide lyase family 4, domain III 440 598 IPR029411 -
Gma06g00824 1255 Pfam Polysaccharide lyase family 4, domain III 1055 1243 IPR029411 -
Gma06g00824 1255 CDD RGL4_C 1057 1244 - -
Gma06g00824 1255 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Gma06g00824 1255 Pfam Polysaccharide lyase family 4, domain II 969 1041 IPR029413 -
Gma06g00824 1255 CDD RGL4_M 946 1045 IPR029413 -
Gma06g00824 1255 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 606 1249 - -
Gma06g00824 1255 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 598 - -
Gma06g00824 1255 CDD RGL4_N 14 292 - -
Gma06g00824 1255 CDD RGL4_N 620 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00824 Gma-Chr6 7566728 7579145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00824 1 597 Polysaccharide Lyase AT1G09890 69.282 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00824 K18195 - gmx:100814721 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00824 06 7566728 7579145 Gma06g00824 06 7566728 7579145 ECH
Gma04g00832 04 8126756 8132055 Gma06g00824 06 7566728 7579145 GST