Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00681 ATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCTTGCATTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGCAGCAGAGTCAATACTCCTAAAGGCACTCAAATTGGTTCTTGTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATGTTCCAAGACTAGTAGCCCTGGAAAACCACCTGTAAAGCCTCGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGATTCAGAAGCTTCAAAACTCACCTCTCCCCCTCAAAAAAGTCAGACAGGGGGTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGTAATGATGGAGGTAGGAAGCTCTAGTATAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAATTCTGGATTACGTGGCCAAGAAATTAAAAGCTCTGGTTCAGTGACTCGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTACTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGGAATTCTGGCCCCAGAAATGGCATATCTATCTCTGATACAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGCCACCTAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCGTTCTGGTGGTCTTAATATTCCAGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGCAGACCAGGTACTGGCAATGAGGAGTTATACGGTGTTATGCCTGTGTCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATTGATAGTATTGCAGAGgtattggtggcacttgagaggattgaacaagatgttgagctaacacatgagcaaattcgtttactggaatccaacttgttccttactggactgaacttgtatgatccacatagagacatgcgattggacattgataacatgtcatatgagcaattgctggctttggaagagaggatgggtactgtgagcacagctctaacagaggaAACACTATCAGAATGCCTAAAGAAAAGTGTCTACCAGTCCTCACCCTCTGACAATGAAGCTGAGAGTTGCAATGAACCTAAGGATGATACAAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGAAGAAGTGGGGAGTTTGCAATGCGAGCACATGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAATTCATCACCATCCTAA 1626 0.3813 MDGYSGKRAIDGVVVPRKGMGLAFRDTANARDRNGQVCSRITCSSRVNTPKGTQIGSCEKGKSLKPSIQSSSAGKEAIGSSSRTCSKTSSPGKPPVKPRKSPSSQLETDSSETSSVQDDSEASKLTSPPQKSQTGGQAELENTVSGNVMMEVGSSSIVSNTRSRRNFHPNSGLRGQEIKSSGSVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRRKDVIKKRNCEGEGSSTTRGKKMSGSSLEARNSGPRNGISISDTRISRNTPHRDRSDSNMAPVRTRKLISGHTRGRLSSQGNANPVPPNESLVMIPSLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPGTGNEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNIDSIAEVLVALERIEQDVELTHEQIRLLESNLFLTGLNLYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSVYQSSPSDNEAESCNEPKDDTKCSICQEEYVAAEEVGSLQCEHMYHVACIQQWLQLKNWCPICKASVAQSNSSPS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00681 541 MobiDBLite consensus disorder prediction 291 306 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 266 280 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 210 354 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 218 234 - -
Gma06g00681 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 540 IPR013083 -
Gma06g00681 541 SMART ring_2 489 529 IPR001841 -
Gma06g00681 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Gma06g00681 541 SUPERFAMILY RING/U-box 484 535 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 63 91 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 44 144 - -
Gma06g00681 541 Coils Coil 393 413 - -
Gma06g00681 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Gma06g00681 541 Pfam Ring finger domain 488 530 IPR001841 -
Gma06g00681 541 MobiDBLite consensus disorder prediction 326 349 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 101 144 - -
Gma06g00681 541 MobiDBLite consensus disorder prediction 156 186 - -
Gma06g00681 541 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Gma06g00681 541 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00681 Gma-Chr6 6180927 6185382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00681 375 530 C3H Transcription Factor Family AT2G15530 43.949 1.33e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00681 - - gmx:100819874 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00687 04 6402920 6407349 Gma06g00681 06 6180927 6185382 GST
Gma17g01875 17 32508736 32511911 Gma06g00681 06 6180927 6185382 PCT
Gma14g01220 14 19795388 19798796 Gma06g00681 06 6180927 6185382 PCT
Gma06g00681 06 6180927 6185382 Gma17g01875 17 32508736 32511911 PCT
Gma06g00681 06 6180927 6185382 Gma14g01220 14 19795388 19798796 PCT