Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00661 ATGGGAGAGGTGGCAGTAATGCATTCTGAGCCTCTGCAGTTTGATTGCAATGACATGAAGCATATCACTGAGAAAGATGTATATAATCTATTGTCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCATCAAATGACAAAAAGATCAATGATTTGAGAGAGAGAGGATACATGAAGTATGGATGTCAACATTACCGAAGAAGATGCCGTATTAGGGCCCCCTGTTGTGATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGACCAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCTCTTTGTGAGACAGAACAAGAGGTTCAGCAAAATTGTATTAACTGTGGCGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCCACAAATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGCCACCCTTGCGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGCTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTCTGCTCTGTGGACATACAATACATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAAGTTCTCACGTGCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGGGAAACAAGAGGCTGA 930 0.4172 MGEVAVMHSEPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLRERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCHKCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQKCLNCKSYNTRETRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00661 309 ProSiteProfiles Zinc finger RING-type profile. 200 242 IPR001841 -
Gma06g00661 309 Gene3D - 271 309 - -
Gma06g00661 309 SMART ring_2 200 242 IPR001841 -
Gma06g00661 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Gma06g00661 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 25 309 - -
Gma06g00661 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 262 IPR013083 -
Gma06g00661 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 309 - -
Gma06g00661 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Gma06g00661 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Gma06g00661 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Gma06g00661 309 SUPERFAMILY RING/U-box 199 247 - -
Gma06g00661 309 Pfam Ring finger domain 199 242 IPR001841 -
Gma06g00661 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Gma06g00661 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00661 Gma-Chr6 5982612 5985411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00661 62 305 C2H2 Transcription Factor Family AT3G18290 40.400 1.54e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00661 K10144 - gmx:100812023 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01916 17 33479893 33483248 Gma06g00661 06 5982612 5985411 PCT
Gma14g01168 14 18624489 18627752 Gma06g00661 06 5982612 5985411 PCT
Gma06g00661 06 5982612 5985411 Gma17g01841 17 30292343 30308940 PCT