Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00648 ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCATACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAATGTGCTTCGAGCACATCCGAAAAGAGCAGCATCTTCTGAAAACAAAACTTCTGTGGTTGTTCCTGCTGTTGTCCAACAGAAGGGAAGGGCAGTGCTTTCAGATGTATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGTCATCAAAGTTTCAGGCCAAAGGAGTTTATACAAAGAAAACCACCAAGCTAGCAGCCTTAGGTGTTTCCACTGAGGTTTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGCTGAAGAATTATCCACAATAAGGATGGTAGAATCAAAGGACACCATAAGAGAAGGTGTTACAGCAGACACTGCACTTTCAATGCAAAACTCTCTGAAATCTGATGAGCTCCAGAGCTCTCCAAACAAAGACATACATATGATTTGGGAGAAGCTAGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCTGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCAAGTCACAGAGCTTCAAAGGAAACCAGTGGCCAACTACATGGATAAGCTGCAGAAAGATATTAATCCAACTATGCGAGGAATTCTGGTTGATTGGCTTGTCGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACACTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAATACGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGGATCTTGTGCATTTTCAGTTATCTGTTCCCACAATCAAAACTTTTCTAAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGCGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAACTTTTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCCGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGAGCTCAAGACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGAAGCTCCCTGAATGCTGTCCCTGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGACAAAGTGTAA 1410 0.422 MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRAHPKRAASSENKTSVVVPAVVQQKGRAVLSDVSNMCAKPHDKCTKSSKFQAKGVYTKKTTKLAALGVSTEVSSTQENVRAKLAEELSTIRMVESKDTIREGVTADTALSMQNSLKSDELQSSPNKDIHMIWEKLGASDSLTIVDIDSELKDSQVWSSYAPDIYSNIQVTELQRKPVANYMDKLQKDINPTMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVLKMEREVLDLVHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVECNFFQFLPSLVAASAVFLAKWTLNESEHPWNPTLEHYTKYKASELKTVVLALQDLQLNTKGSSLNAVPEKYKQQKFNCVANLSPKPVQSLFQDKV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00648 469 Pfam Cyclin, C-terminal domain 336 458 IPR004367 -
Gma06g00648 469 PANTHER CYCLIN-A2-4 50 465 - -
Gma06g00648 469 SMART Cyclin_C_2 336 459 IPR004367 -
Gma06g00648 469 SUPERFAMILY Cyclin-like 197 333 IPR036915 -
Gma06g00648 469 Pfam Cyclin, N-terminal domain 207 333 IPR006671 -
Gma06g00648 469 SUPERFAMILY Cyclin-like 335 458 IPR036915 -
Gma06g00648 469 CDD CYCLIN 237 326 IPR013763 -
Gma06g00648 469 Gene3D - 221 334 - -
Gma06g00648 469 ProSitePatterns Cyclins signature. 238 269 IPR006671 -
Gma06g00648 469 SMART cyclin_7 340 428 IPR013763 -
Gma06g00648 469 SMART cyclin_7 243 327 IPR013763 -
Gma06g00648 469 Gene3D - 207 455 - -
Gma06g00648 469 PANTHER CYCLINS 50 465 IPR039361 -
Gma06g00648 469 CDD CYCLIN 334 426 IPR013763 -
Gma06g00648 469 PIRSF Cyclin_A_B_D_E 23 468 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00648 Gma-Chr6 5873339 5878539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00648 9 465 Core Cell Cycle Gene Families AT5G25380 52.620 6.91e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00648 K06627 - gmx:100807750 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00655 04 6052030 6062268 Gma06g00648 06 5873339 5878539 GST
Gma17g01942 17 34494048 34501005 Gma06g00648 06 5873339 5878539 PCT
Gma14g01148 14 17874124 17879979 Gma06g00648 06 5873339 5878539 PCT
Gma06g00648 06 5873339 5878539 Gma17g01942 17 34494048 34501005 PCT
Gma06g00648 06 5873339 5878539 Gma14g01148 14 17874124 17879979 PCT