Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00640 ATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACAAATGAAAAGCACTCAGAGGTTGCTGCATCGTATATTGAGacacaattaataaaggcaagggagcaacaacagcagcagaaccagcagcagccacagccccagcaatcacagcatcagcaacaacacatgcagatgcaacagctcctgttgcagagagcacagcaacaacagcagcagcagcagcaacaacaacagcagccacaatcgcagcaacagcagtcacaaccacaacaacaacagcaaagtagggatagGCCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAACGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTCTTGGACCCAAATCATGCACCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCCAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCACAACAAAATCTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTGCGAATGCTATTAAATAATAGGAATATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCACTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGATACAGATATGCTAGTGAAGttgaagctggctcagttacagcagcagcaacaacaacagtcaagtaccaatgcacagcagcagcagcttcaacagcaCACCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGTGGAGgtggtggtggcagtgtcactgtggatggtagcatgtcaAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAACAGCCTGGCTCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACTACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCTTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCGAAGCCTTTAATGATGTTTAGCACAGATGGCACTGGAACCCTTACGTCACCATCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGACACGGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTTCCTGTTGCCATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGAAGTTGTGCTAGAGTCTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTCGGGAGGTACCTTGCTGCAGCGGCAGAGAATATTGTGTCTATTTTTGATGTGGAGACACAAGTGTGTCGATATTCACTAAAGGGACACACAAAACCGGTGGTTTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGATGGGGAATGTGTTCATGAACTTAGCTGTAACGGAAATAAGTTTCATAAATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGTTGTGGAACATGAGCGAGAACAAGACGATGACTCTGTCTGCTCATGATGGTCTCATTACTTCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2679 0.3916 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRAQQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 807 IPR001680 GO:0005515
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Gma06g00640 892 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 892 IPR044716 GO:0003714
Gma06g00640 892 MobiDBLite consensus disorder prediction 454 514 - -
Gma06g00640 892 MobiDBLite consensus disorder prediction 89 155 - -
Gma06g00640 892 Gene3D - 741 892 IPR015943 GO:0005515
Gma06g00640 892 SMART WD40_4 601 640 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 812 851 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 729 765 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 643 682 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 768 806 IPR001680 GO:0005515
Gma06g00640 892 SMART WD40_4 686 726 IPR001680 GO:0005515
Gma06g00640 892 Coils Coil 402 422 - -
Gma06g00640 892 MobiDBLite consensus disorder prediction 408 534 - -
Gma06g00640 892 Gene3D - 584 740 IPR015943 GO:0005515
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 685 - -
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 685 IPR001680 GO:0005515
Gma06g00640 892 MobiDBLite consensus disorder prediction 408 442 - -
Gma06g00640 892 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 892 - -
Gma06g00640 892 Pfam LisH 10 36 IPR006594 GO:0005515
Gma06g00640 892 CDD WD40 608 892 - -
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 731 - -
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Gma06g00640 892 MobiDBLite consensus disorder prediction 361 394 - -
Gma06g00640 892 SMART Lish 8 40 IPR006594 GO:0005515
Gma06g00640 892 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Gma06g00640 892 MobiDBLite consensus disorder prediction 89 168 - -
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Gma06g00640 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 639 - -
Gma06g00640 892 Pfam WD domain, G-beta repeat 609 639 IPR001680 GO:0005515
Gma06g00640 892 Pfam WD domain, G-beta repeat 689 726 IPR001680 GO:0005515
Gma06g00640 892 Pfam WD domain, G-beta repeat 647 682 IPR001680 GO:0005515
Gma06g00640 892 Pfam WD domain, G-beta repeat 855 892 IPR001680 GO:0005515
Gma06g00640 892 Pfam WD domain, G-beta repeat 771 805 IPR001680 GO:0005515
Gma06g00640 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 735 IPR001680 GO:0005515
Gma06g00640 892 SUPERFAMILY WD40 repeat-like 606 892 IPR036322 GO:0005515
Gma06g00640 892 Coils Coil 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00640 Gma-Chr6 5793117 5806172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00640 687 891 Miscellaneous Gene Families AT5G08390 24.286 1.21e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma06g00640 WD40 0.0044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00640 - - gmx:100805628 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00647 04 5969900 5979801 Gma06g00640 06 5793117 5806172 GST
Gma17g01949 17 34669150 34680301 Gma06g00640 06 5793117 5806172 PCT
Gma14g01138 14 17591451 17606957 Gma06g00640 06 5793117 5806172 PCT
Gma06g00640 06 5793117 5806172 Gma17g01949 17 34669150 34680301 PCT
Gma06g00640 06 5793117 5806172 Gma14g01138 14 17591451 17606957 PCT