Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00632 ATGGCTGCTACTACTCCTTCATCTACATACCCATTCGGAACCCCTTTCCACTCGCACACTCGAAGACTTGATTGCTCAACCTCAACCTCCATGTTCCCCCTTCATTCAGACCTATCTACAATTTCTATGTGCCCGCGTTCTGCTTCAAAGGGATTAGTTGATCGAGTATATGCACAGCTTGATGGTGATGATTACCACAGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTCAGGTACACAAATATCACCGAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAAATTCTTACAGGAAGGCGATCACTCATGACGACAATGAGAAGAAAGAATGGTCTTTCTGGTTTTACTTCCCGATTTGAAAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAGGGGAGGCAAGAACGCGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGCCGCCACTCTTTACTTCCAAAAATTGAGGAGGGGCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGGCGATTTAGAGAAGCTGCTAAGGGTGTCACGAAACGAATTGGTAGAGGTATGCATGAGTTGGCAGCTAAAGTTGATGAGTATGCTCGTGGTATGATGGGTCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAAGATCTCATATGTGTTCTGCAAGAAGTAGCTTCCCTGGATTCAATGGGACCTGTCTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGATAACAGTCAGAAAAGTGATATGTCAGATGAGCAGAAAAATGAAGGTTTTGTTAAATCTGATTTGTTAGATAATCCTGTTTGGCCTCAAACATATGGCAATTGCTTTGTGGCGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTATTGTTGTTCATGCTGGATTAACGATGGAGCCATCACTTGAACTGTTTCAGGAAAAATTTCCGGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGCTTGAAGCCATTTTGTGTCATACCTTCGTCCTTTCTACAAAGAGCCTATGACCAGGTGGTACATGATGTTGATCAACAGAGAATTCCAGTGCGTTTTGTTATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCGATGTGGAGCATTTGATATAAACTTTATGTCATGCTTACCAAACATGATTGTCATGGCCCCATCTGATGAGCTTGAACTCATGCACATGGTGGCTACTGCTACTCGTATCAATAATCAGCCTATCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGGAAGGCTACACTATAGGTGATGGAATCCCCATCAAGATAGGAAGAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCTTAAAGGCTCATTCACTCCTTGCAAAGCTTGGCATTGAGGTCACGGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATTATGCTTCTGAGGCAGCTTTGTAAACACCACTCTTTTCTAGTTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAGTTTATTGCAGTTAATGGACTGCTCGATGGAAGAATTAAGTGGCGACCAATTGTTTTACCAGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGACCAAGCAGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTACTAGGCCGTACCCGTGAAGCTCTCCTATTTATGTGTTCGTGA 2151 0.4342 MAATTPSSTYPFGTPFHSHTRRLDCSTSTSMFPLHSDLSTISMCPRSASKGLVDRVYAQLDGDDYHREKVPTPILDMVENPLCLKNLSLKELKQLAVEIRSDLSSIMSGTQISPKASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDDNSQKSDMSDEQKNEGFVKSDLLDNPVWPQTYGNCFVATLVAEAEKDKDIIVVHAGLTMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLRCGAFDINFMSCLPNMIVMAPSDELELMHMVATATRINNQPICFRYPRGALVGEGYTIGDGIPIKIGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIMLLRQLCKHHSFLVTVEEGSIGGFGSHVAQFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLFMCS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00632 716 SUPERFAMILY TK C-terminal domain-like 568 704 IPR009014 GO:0003824
Gma06g00632 716 Gene3D - 395 562 - -
Gma06g00632 716 CDD TPP_PYR_DXS_TK_like 401 554 - -
Gma06g00632 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 7 715 IPR005477 GO:0008661|GO:0016114
Gma06g00632 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 72 457 IPR029061 -
Gma06g00632 716 CDD TPP_DXS 116 364 IPR005477 GO:0008661|GO:0016114
Gma06g00632 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 359 IPR005477 GO:0008661|GO:0016114
Gma06g00632 716 Pfam Transketolase, C-terminal domain 573 696 IPR033248 -
Gma06g00632 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 74 705 IPR005477 GO:0008661|GO:0016114
Gma06g00632 716 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 77 702 IPR005477 GO:0008661|GO:0016114
Gma06g00632 716 Gene3D - 573 704 IPR009014 GO:0003824
Gma06g00632 716 SMART Transket_pyr_3 395 560 IPR005475 -
Gma06g00632 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 7 715 - -
Gma06g00632 716 Pfam Transketolase, pyrimidine binding domain 398 557 IPR005475 -
Gma06g00632 716 Gene3D - 67 365 - -
Gma06g00632 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 395 583 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00632 Gma-Chr6 5710317 5716373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00632 433 655 Acyl Lipid Metabolism Gene Families AT1G55510 24.686 4.57e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00632 K01662 - gmx:100793268 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00632 06 5710317 5716373 Gma06g00632 06 5710317 5716373 ECH
Gma04g00641 04 5880564 5894384 Gma06g00632 06 5710317 5716373 GST