Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00577 ATGGCGTACCATAACCCCCAAGACCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCATACTCTCCCTCACAACTCCTTGCTCTCCGACCCTGCCTCCAAACCTGCCTCCGATCCTCACCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGAACGGACTACACCCACACCACCACCACCACCACCACCAACACCGCTGCTAACAACAGCAACAACAGCACCAACTTCCTCAACCTCCACACTTCCGCTTCCGACTCCGGCCAATGGCAGGCCCGCCCGATCCTTAACCGCAACCACAGCGAGTTCATCGATGACGTGGCCGGCGCAGGCGCCGAATCCGGAGATTTGAAGGGAGAGACGGCGCCGGTGGACGGCCTCTTGAACTGGCAGAATGCGAGATTGAAGGCGGAGATTTTAACGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGATAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGATAAAATCGTGGACATAAGAGAGGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGGTCTTAA 1203 0.5145 MAYHNPQDLPLHHFTDQQQHHNHTLPHNSLLSDPASKPASDPHQPAPNWLNNALLRTDYTHTTTTTTTNTAANNSNNSTNFLNLHTSASDSGQWQARPILNRNHSEFIDDVAGAGAESGDLKGETAPVDGLLNWQNARLKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSSPSTSTVLKSKRKRS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00577 400 Pfam KNOX2 domain 194 244 IPR005541 GO:0003677|GO:0005634
Gma06g00577 400 SMART HOX_1 324 389 IPR001356 GO:0003677
Gma06g00577 400 CDD homeodomain 325 386 IPR001356 GO:0003677
Gma06g00577 400 SMART ELK_2 302 323 IPR005539 GO:0003677
Gma06g00577 400 SMART KNOX1_2 137 181 IPR005540 GO:0003677|GO:0005634
Gma06g00577 400 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 35 399 - -
Gma06g00577 400 Pfam KNOX1 domain 139 180 IPR005540 GO:0003677|GO:0005634
Gma06g00577 400 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
Gma06g00577 400 ProSiteProfiles ELK domain profile. 302 322 IPR005539 GO:0003677
Gma06g00577 400 SMART KNOX2_2 190 245 IPR005541 GO:0003677|GO:0005634
Gma06g00577 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 399 - -
Gma06g00577 400 Gene3D - 323 384 - -
Gma06g00577 400 SUPERFAMILY Homeodomain-like 324 387 IPR009057 -
Gma06g00577 400 Pfam ELK domain 302 323 IPR005539 GO:0003677
Gma06g00577 400 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00577 Gma-Chr6 5230489 5233902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00577 1 399 Homeobox Transcription Factor Family AT5G25220 65.766 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma06g00577 KNOX2 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00577 - - gmx:100810257 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00593 04 5421273 5425261 Gma06g00577 06 5230489 5233902 GST