LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00574	ATGGCTGAGGATAAGGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTGCAGTTAATGCGTGTGATGGATCATCCAAATGTGATCTCTTTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAACTTTTTCTCAATTTGGTGATGGAGTATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAGTCGAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCACCAGAACTTATATTTGGGGCCACAGAGTATACCAGTTCGATTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCTAATGCTCGCTTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAACAGGAATTATCTGGAGCATCTTCCGAGCTTGTTAATAAGTTGATACCTGACCATGTGAAGCGGCAAATGGGGATACAGTTTATGCATCTGGGAGGATCGTGA	1143	0.4234	MAEDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTGPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVEGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASSELVNKLIPDHVKRQMGIQFMHLGGS	380

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma06g00574	380	ProSiteProfiles	Protein kinase domain profile.	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma06g00574	380	PANTHER	BNAANNG31110D PROTEIN	1	374	-	-
Gma06g00574	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
Gma06g00574	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	1	374	-	-
Gma06g00574	380	SMART	serkin_6	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma06g00574	380	ProSitePatterns	Protein kinases ATP-binding region signature.	46	70	IPR017441	GO:0005524
Gma06g00574	380	CDD	STKc_GSK3	35	327	IPR039192	-
Gma06g00574	380	Gene3D	Phosphorylase Kinase; domain 1	25	119	-	-
Gma06g00574	380	SUPERFAMILY	Protein kinase-like (PK-like)	39	349	IPR011009	-
Gma06g00574	380	Pfam	Protein kinase domain	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00574	Gma-Chr6	5164443	5168533	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00574	44	362	MAP Kinase Gene Family	AT3G59790	35.629	2.64e-59	195

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Gma06g00574		Pkinase	9.9e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00574	K14502		-	gmx:100799582	778.089

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00588	04	5359827	5363601	Gma06g00574	06	5164443	5168533	GST

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