Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00570 ATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTAGGGACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGGGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAATCTTCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACAGCCAGAGACTCAGAGAGTGGTGGCTTCACCAAATGTCATCACCTCCTCGGCAAGCAACTTCTCCATGAAGAGTAACGAAACTGAGACAATGTTGTTGCCACAGAAGAGACAAGAGGAGGAGCAAGAAGGAGAGGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAATGCTCAACAGTTCAAGCCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCCATTGAACTATGCTCTGTGATTCCACCACAGGCTCTTTGA 585 0.4752 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQPETQRVVASPNVITSSASNFSMKSNETETMLLPQKRQEEEQEGEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00570 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
Gma06g00570 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gma06g00570 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gma06g00570 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gma06g00570 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 188 - -
Gma06g00570 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gma06g00570 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gma06g00570 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gma06g00570 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gma06g00570 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00570 Gma-Chr6 5109791 5111114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00570 1 194 AP2-EREBP Transcription Factor Family AT5G25190 63.636 2.78e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g00570 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00570 - - gmx:100819158 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00570 06 5109791 5111114 Gma06g00570 06 5109791 5111114 ECH
Gma04g00584 04 5309988 5311265 Gma06g00570 06 5109791 5111114 GST
Gma17g02060 17 37545146 37546190 Gma06g00570 06 5109791 5111114 PCT
Gma14g01049 14 13236951 13238004 Gma06g00570 06 5109791 5111114 PCT
Gma06g00570 06 5109791 5111114 Gma17g02060 17 37545146 37546190 PCT
Gma06g00570 06 5109791 5111114 Gma14g01049 14 13236951 13238004 PCT