Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00567 ATGAATCTACCGATTACAAGGGCACGAGGAGAGTACTCTGCAATGGAAACACTGAGCCACGAGTCTCCCTTCTATGATAATAACCTCTCCGCTGAAAAGACTCCTCCAAGTCCAAGCACACCATTGCAGAATCCACAAGAGAAGAAACAACTATCTGTTAAGGAACAAGAAGAGGCAAAAACAGATACTTTATTGGATCTAAATGCCTTTGGTGATGATTCTGCTGTTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGCCAAGCACTTCCTCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTACTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAGGAGAGAGAGGTCAATTACAAAGAGAGGTCATCATAGATCAGGATCACGTGGCATGATGGCCTCAGCAACAACAGCTTTCGGAATTCCCTTCCTCCATAATCACCTTCACCACTATGCCACTATGGCTTCTCTCCCTCTCCATGGTGGTTGTAGTAATAATAAACCACTTGGAATTAAGGCTCACTCCATCATTCACAAGCCTTCTTCAAATTCTTCTCATATTTCATTCAATGGGTTTGGAACCACTTTTGGACATCATGGATGGTCAAGACCCCTTATTGATCAACAACCTAGAATAGGGAAGCTAACGATGGAAAGTTGTCACAAAACATCACGAGGTAATGTTGGAAAATTCGATGCGGTGAAAACGACCATGATTAATTCAGCGACCATTGAAGAAATCAGTGGATATAATATGATTAGTGGAGTTACTCGTTTTAAGACTAATCAAGAGGAAATGAAACACCTTGATTTGTCCCTAAAGCTGTAA 882 0.4286 MNLPITRARGEYSAMETLSHESPFYDNNLSAEKTPPSPSTPLQNPQEKKQLSVKEQEEAKTDTLLDLNAFGDDSAVGCSPVLNLITCLDTDLPSTSSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHRRERSITKRGHHRSGSRGMMASATTAFGIPFLHNHLHHYATMASLPLHGGCSNNKPLGIKAHSIIHKPSSNSSHISFNGFGTTFGHHGWSRPLIDQQPRIGKLTMESCHKTSRGNVGKFDAVKTTMINSATIEEISGYNMISGVTRFKTNQEEMKHLDLSLKL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00567 293 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 293 - -
Gma06g00567 293 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 293 IPR044246 GO:0009788
Gma06g00567 293 SUPERFAMILY beta-beta-alpha zinc fingers 105 136 IPR036236 -
Gma06g00567 293 MobiDBLite consensus disorder prediction 123 148 - -
Gma06g00567 293 MobiDBLite consensus disorder prediction 1 57 - -
Gma06g00567 293 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Gma06g00567 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Gma06g00567 293 MobiDBLite consensus disorder prediction 20 49 - -
Gma06g00567 293 Gene3D Classic Zinc Finger 88 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00567 Gma-Chr6 5071879 5073020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00567 82 293 C2H2 Transcription Factor Family AT5G25160 40.708 4.95e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g00567 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00567 - - gmx:100783199 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00581 04 5264815 5265942 Gma06g00567 06 5071879 5073020 GST
Gma14g01043 14 13057323 13058903 Gma06g00567 06 5071879 5073020 PCT
Gma06g00567 06 5071879 5073020 Gma14g01043 14 13057323 13058903 PCT