Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00564 ATGAGTAGCTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCTATTTATAATCTTGATGATTCAGATGACGATGCTGATCTATTGCCAAGAAACTCAGGGACAACTCAGGAAAAGATAGAGAGGATAGAGAGAAGTGATGCGAAAGAGAATTTATGTCAAGCCTGTGGAGAAAATGAAAATCTTGTGAGCTGTGGAACGTGCACATATGCTTACCATCCTAAGTGTTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTgttagcccacttaatgatattgataagaTATTAGATTGTGAGATGCGGCCTACTACTGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTTAAGTGGAAGGGCCTATCCTATTTGCATTGCACGTGGGTGCCGGAGAAAGAGTTTCTGAAAGCATTTAAGACTCATCCTCGTCTAAAGACCAAGGTGAATAACTTTCATCAAAAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCCGAATGGACTACAGTTGATCGAATACTTGCATGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATCGAAAGATTCAATAGATTGCGGTCTAGATCCAGCAAGTTTTCCTCTGGTAAACAAAAAAACAGTGTTAAGGATGATGCTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTATGAACAAAGCCCTGAGTTTCTTTCAGGTGGTACATTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCACTTTTTAAAGAGGGTGTCTCTCCACATCTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCCACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCATTTAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTTCTTTTGACATCATATGAAATGATCAACTTTGACACAGCATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAGCTACCTCCTAAAAAGGAGCTTATTCTACGTATTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACTCGCAATTATCAGATATTAACTCGTCGCGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGACGCAAAAGAAGCATTCAAACAGCTGCTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAGAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTGCGTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTCAACGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGGCTGGGGATAAACCTTGCAACTGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTTTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCCGGCAAATCCCGCCAAATTCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCCGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAGACACTTAACAGTTCAGAAAGGACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAGGGGAAGCGAAACCGGAAGTCGATGGTTTCCGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAATTACAACTGCTAGAAGGCCTTATAAAAAAAAAGCACGTACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCGCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGTGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATATTATTACGGTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTATGTTTTGCTACGTGCAGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATATGCCAGGAGTTGAATCTTTCCTTTATAAACTTACCAGTTCCAGGACAAGTTAGTTCTCAGGCACAAAATGGAGCAAATTTGACAAATGCAGAAGTTTCCAACAATCAATCCAAGGAAAATGGTGGGAGTGATATTGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCAAGACTCGTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAAAGAGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTAACAAATGAAGAACTTAAAAGTGAAGCCAAGGCTACTAATTTTCCAGGTGATAAATTAGGGGACACTGACACCCAAATGATTGATCAACTTCCGCAAGTACAAACAATAGCTTCAGAAGAAATTTCAGCTGAATGTGATAGTGATCCCACTCGATTGGAGTTAGTTCGCCTTTACAACGAGATGTGCAAGGCAGTGGAGGAAGACTCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCGGCAGAGCTCAATGTAGTGAAGAATTTCCCTCCACTAGAAACTCTTTGCGAAGACATTAACAAAATTCTAACACCCACACAAGAACAACCTATTGCAGAAATGCCAATATCGAATTCAGATAACAAATCAGAGACTATGTCACATGGTGAAAATTTGGGCTCCAAATCACCGCCAATCTCTCAAGACTGCAAGCCTAAAGATTCAGAAGACAATGAGAATAAAGATATGAAAATAGAATCTGAATCTATAAAAGAAAGCTGTTCAAGCCTGTTAGAAGAGAAGAATGAAACACCGACTCTTCCGGATAAAGAGGAAAGTAAAACAGAAATGGATGAAACTATGAATGATGCTGAGTTGAATGAAAACCCGGAGAAATCTGACGCTGTATTGGAAGGTTAA 4323 0.3997 MSSLVERLRVRSDRRPIYNLDDSDDDADLLPRNSGTTQEKIERIERSDAKENLCQACGENENLVSCGTCTYAYHPKCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSGKQKNSVKDDAELKKQQKEFQHYEQSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKEGVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGHLISESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAFKQLLESSGKLQLLDKMMVKLREQGHRVLIYSQFQHMLDLLEDYCAYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETLNSSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKSMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGITTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSATFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFVSQHPQTPLFSDDILLRYPGLKGAKIWKEEHDYVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLSFINLPVPGQVSSQAQNGANLTNAEVSNNQSKENGGSDIAADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSEAKATNFPGDKLGDTDTQMIDQLPQVQTIASEEISAECDSDPTRLELVRLYNEMCKAVEEDSMDLVQTSLAREPAELNVVKNFPPLETLCEDINKILTPTQEQPIAEMPISNSDNKSETMSHGENLGSKSPPISQDCKPKDSEDNENKDMKIESESIKESCSSLLEEKNETPTLPDKEESKTEMDETMNDAELNENPEKSDAVLEG 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00564 1440 SMART chromo_7 190 244 IPR000953 -
Gma06g00564 1440 SMART chromo_7 99 162 IPR000953 -
Gma06g00564 1440 Gene3D - 180 241 - -
Gma06g00564 1440 SMART DUF1086_2 910 1069 IPR009462 GO:0003677|GO:0006338
Gma06g00564 1440 Coils Coil 838 858 - -
Gma06g00564 1440 Pfam CHDCT2 (NUC038) domain 1079 1112 IPR012957 -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 1334 1366 - -
Gma06g00564 1440 Pfam PHD-finger 54 96 IPR019787 -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 1334 1440 - -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 890 952 - -
Gma06g00564 1440 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Gma06g00564 1440 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Gma06g00564 1440 CDD SF2_C_SNF 607 733 - -
Gma06g00564 1440 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Gma06g00564 1440 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1055 - -
Gma06g00564 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 519 IPR027417 -
Gma06g00564 1440 Pfam CHD subfamily II, SANT-like domain 933 1066 IPR009462 GO:0003677|GO:0006338
Gma06g00564 1440 SMART PHD_3 53 96 IPR001965 -
Gma06g00564 1440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Gma06g00564 1440 SMART ultradead3 282 495 IPR014001 -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 1148 1172 - -
Gma06g00564 1440 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Gma06g00564 1440 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 901 922 - -
Gma06g00564 1440 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Gma06g00564 1440 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Gma06g00564 1440 Gene3D - 278 528 IPR038718 -
Gma06g00564 1440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Gma06g00564 1440 Gene3D - 529 753 IPR027417 -
Gma06g00564 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Gma06g00564 1440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 102 IPR013083 -
Gma06g00564 1440 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Gma06g00564 1440 Gene3D - 103 175 - -
Gma06g00564 1440 CDD CD2_tandem 190 241 - -
Gma06g00564 1440 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Gma06g00564 1440 CDD CD1_tandem 98 171 - -
Gma06g00564 1440 Gene3D - 1036 1213 - -
Gma06g00564 1440 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1055 - -
Gma06g00564 1440 SMART DUF1087_2 839 905 IPR009463 -
Gma06g00564 1440 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Gma06g00564 1440 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Gma06g00564 1440 SMART helicmild6 638 722 IPR001650 -
Gma06g00564 1440 SUPERFAMILY Chromo domain-like 178 242 IPR016197 -
Gma06g00564 1440 MobiDBLite consensus disorder prediction 1370 1440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00564 Gma-Chr6 5029359 5047013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00564 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.381 2.62e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma06g00564 SNF2_N 9.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00564 K11643 - gmx:100804203 2799.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00579 04 5220989 5245476 Gma06g00564 06 5029359 5047013 GST
Gma17g02073 17 37801436 37825267 Gma06g00564 06 5029359 5047013 PCT
Gma06g00564 06 5029359 5047013 Gma17g02073 17 37801436 37825267 PCT