Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00559 ATGGCAAAGTGTCATAAGAACAACGTCGGATCCATCGCTCTCGACCACCGCCACTCCACCAAAAATGCCACCACCGGCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGGTATCGCCAGCGCGGCGGCGCCGACAACGATGACGGCGACTTCAACTCGGCGGCGAGCCACACAGAGAAGGAGGAGAGGTCCGAGAAGCTATCGGATCTGCTGAACGCAGCGGAGAGCAAAACAGCGACGGAAGAGGCATTGGCGGAGCTGAAGCAAGTGGTGAAGGAGCTGCGCGAAGAAGACTTCACGAAGCGGCGAATCGCCGCTGCGAGAGTGAGGTCACTCGCGAAGGAAGATTCGGAAGCCAGAGCGAATCTCGCAGTGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATGATTCAGAAGACGCTCATTCTCAAATCGCATCGCTCTACGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGCGCGGTACACAAGATGCTGAAGCTAATTGAATCGAGCGGTTCAGATTCGTCGGTGTCTGAAGCGATCGTTGCAAATTTCCTTGGCTTAAGCGCTTTGGATTCGAACAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAAAGAATTTAAACGAAAGTAAAATCGAGTCCAAATCACAAATGAAGCAAGATGCTATGCGAGCTTTGTACAATCTCTCGATCTGTCAGAGCAACGTTTCAGTAGTTTTGGAAACCGATTTGGTTTTGTTTTTAGTGTCCACAATAGGAGACATGGAAGTGAGTGAGAGGAGTCTCGCGATTCTAAGCAATTTAGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTTAGCGATGCGATTCCGATTCTTGTGGACGCGTTGAGTTGGACGGACTCGCCGGAGTGCCAGGAGAAGGCGTCGTACGTTTTGATGATCATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGGTAGTTTCGTCGCTGCTTGAATTAACACTTGTGGGAACCACACTGGCTCAGAAGAGAGCCTCCAGAATATTAGAGTGTTTGAGGGTAGACAAAGGGAAACAAGTTTCTGGAAGCTACGGTGGAAACTTTAACTTGGGTGTGTCTGCTCCTATTTGTGGATCTTCTTCATCGAATGGAGGGAAAGGGTGTTTGGTTGTGGATGATGGGATGATGAGTGAGGAAAAGAAAACGGTGAAGCAGTTAGTGCAACAGAGTTTGCAGAGCAATATGATGAAGATTGTCAAGAGGGCTAACTTGCGTCAGGATTTTCTTCCATCTGGGAATTTTGCTTCACTCACTTCCACTTCCACTTCCAAGAGCCTCCCATTTTGA 1440 0.5069 MAKCHKNNVGSIALDHRHSTKNATTGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGADNDDGDFNSAASHTEKEERSEKLSDLLNAAESKTATEEALAELKQVVKELREEDFTKRRIAAARVRSLAKEDSEARANLAVLGAIPPLVGMLDDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGSDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLNESKIESKSQMKQDAMRALYNLSICQSNVSVVLETDLVLFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVSDAIPILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGVVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYGGNFNLGVSAPICGSSSSNGGKGCLVVDDGMMSEEKKTVKQLVQQSLQSNMMKIVKRANLRQDFLPSGNFASLTSTSTSKSLPF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00559 479 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 479 - -
Gma06g00559 479 SMART arm_5 262 300 IPR000225 GO:0005515
Gma06g00559 479 SMART arm_5 214 261 IPR000225 GO:0005515
Gma06g00559 479 SMART arm_5 128 169 IPR000225 GO:0005515
Gma06g00559 479 SMART arm_5 301 343 IPR000225 GO:0005515
Gma06g00559 479 SMART arm_5 171 213 IPR000225 GO:0005515
Gma06g00559 479 MobiDBLite consensus disorder prediction 52 78 - -
Gma06g00559 479 Coils Coil 69 109 - -
Gma06g00559 479 SUPERFAMILY ARM repeat 98 384 IPR016024 -
Gma06g00559 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 274 IPR000225 GO:0005515
Gma06g00559 479 Gene3D - 63 243 IPR011989 -
Gma06g00559 479 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 479 - -
Gma06g00559 479 MobiDBLite consensus disorder prediction 48 78 - -
Gma06g00559 479 Gene3D - 244 393 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00559 Gma-Chr6 5007238 5008942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00559 108 390 U-box Gene Family AT1G67530 31.142 1.42e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00559 - - gmx:100796229 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00574 04 5187440 5189080 Gma06g00559 06 5007238 5008942 GST
Gma17g02078 17 37941037 37944181 Gma06g00559 06 5007238 5008942 PCT
Gma14g01027 14 12624050 12626531 Gma06g00559 06 5007238 5008942 PCT
Gma06g00559 06 5007238 5008942 Gma17g02078 17 37941037 37944181 PCT
Gma06g00559 06 5007238 5008942 Gma14g01027 14 12624050 12626531 PCT