Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00546 ATGGTTGACGGCCACGAATATGGCCTTAAGAGACAGTCACCCCGAGAGACTGAAATTTCCAGACCCTCAAATCAAACTCTTCTATTCTCTCATCAATCAATCAATCCAGTTCCCTCTCGGATAGGAATGGGAATATATCTCAGCACTCCAAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACTGTCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCATTTTTTGGTGTCTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTTTCTTCATCAACAGTTGTTCAAAAGTGAGACATACTTAACTGGAGATATAGGAGCCTCCCTTCAGAAAGCCTTTTTGAGAATGGATGAAATGATGCGTGGTCAAAGGGGATGGAGGGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGTGATGGGAATTGCCATGTTGATGATTGGGCTTTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCGCGTTGTGTGATATCCAGGAAGGGCCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTCATTCACGTAGGACGAGTCAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAGTTTCTTTCTGCTGAAAAACAAATTGTAACTGCCAATCCAGACATCAACACTGTTGAGCTTTGTGACGAAGATGAGTTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTGGTTGATTTTGTTCATGAACAATTGCACTCGGAAACAAAACTTTCTGCCGTGTGTGAAAGAGTACTTGATCGGTGTTTGGCACCATCAACTGCCAGTGGTGAAGGATGTGACAACATGACCATGATTGTGGTGCAGTTCAAAAAACCTGCTCAGTCCAGTGTACCAGCAGAAGAGTCCTCTTCAAACTGA 1164 0.4235 MVDGHEYGLKRQSPRETEISRPSNQTLLFSHQSINPVPSRIGMGIYLSTPKTEKFSEDGENDCLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQLFKSETYLTGDIGASLQKAFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCHVDDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHVGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFVHEQLHSETKLSAVCERVLDRCLAPSTASGEGCDNMTMIVVQFKKPAQSSVPAEESSSN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00546 387 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 40 379 - -
Gma06g00546 387 SMART PP2C_4 54 369 IPR001932 -
Gma06g00546 387 MobiDBLite consensus disorder prediction 1 21 - -
Gma06g00546 387 Gene3D - 42 372 IPR036457 -
Gma06g00546 387 CDD PP2Cc 65 371 IPR001932 -
Gma06g00546 387 Pfam Protein phosphatase 2C 65 146 IPR001932 -
Gma06g00546 387 Pfam Protein phosphatase 2C 195 356 IPR001932 -
Gma06g00546 387 MobiDBLite consensus disorder prediction 1 17 - -
Gma06g00546 387 PANTHER PROTEIN PHOSPHATASE 2C 40 379 IPR015655 GO:0004722|GO:0006470
Gma06g00546 387 SUPERFAMILY PP2C-like 45 373 IPR036457 -
Gma06g00546 387 SMART PP2C_SIG_2 70 371 IPR001932 -
Gma06g00546 387 ProSiteProfiles PPM-type phosphatase domain profile. 65 371 IPR001932 -
Gma06g00546 387 ProSitePatterns PPM-type phosphatase domain signature. 94 102 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00546 Gma-Chr6 4827658 4838100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00546 43 384 PP2C-type Phosphatase Gene Family AT2G25070 76.901 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00546 K17499 - gmx:100787778 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00546 06 4827658 4838100 Gma06g00546 06 4827658 4838100 ECH
Gma04g00558 04 5018138 5025696 Gma06g00546 06 4827658 4838100 GST
Gma17g02135 17 38865506 38871460 Gma06g00546 06 4827658 4838100 PCT
Gma14g00928 14 10456505 10462445 Gma06g00546 06 4827658 4838100 PCT
Gma06g00546 06 4827658 4838100 Gma17g02135 17 38865506 38871460 PCT
Gma06g00546 06 4827658 4838100 Gma14g00928 14 10456505 10462445 PCT