Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00533 ATGCATGGTTTTGACTGGGATGGTCGTCATGTTTTTGACAACCATCAAGAAGATTTCCATCATTGCCACTTTGAGGATATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAATTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAGCCTGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACAAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAAATTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGAGTGATGAAATTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACCGCTGTGGTTTCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTTACCCATGAAGGCAGAGTTGGAATAAACCTTTACGTTGTGTCAAAGCCTAATTTTGCAAAAGCAGAAGACATCCAAATGATGACTCCAAACCAATCAACTATGTCAGTGAATGGTGTAAAAGAAGAACAACATCTCTCAAAACCTCAAAGTGGCAATGATGGAAATCTTCTTGATGGTTGTCAAAAACATGACGACCATCCCAGTCAAAACCATGCATTCAATGACGAATGTGGATCTCCGGCCAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGAAACAACGGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATTCTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCCGGATGAGCTTTCTGATTTGGAGAATAATGATGTCGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACACACTTTGGGCTCTCTTTTCTCTTCTAATGGATCTAGCAGGACACAGAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAACTTGGTGGATTTTCTGAGAGTTTATATTCAAAAGGGACATGTTCAGTTGATGATGCATCTTCTGTGGTTGATGCTCCGGAGACGTCTGAATTGGCTAGTTCATCTGGTCACAGCCTAGAAACAAAGAACAAAAGTTTGGTTAGAAGAGATAAACAGCATCAAGATAAGGCTCGTGCTTGGTCCTTTAATGGTTATGCAGATTCCTCTGAAGTTACTGTGTCAAACGGAGAAATGGCTGGAGCAACAAAGTCAAGTGAACCCCAACAAACATGTCAGGGTCAAGGGAAGGCAAACACAACTACTCAATGTGTTACAAGCAGCAGCACATCAGAAGTAACCAAATCCACAATAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCAGTACGTGCAGTTCAGCGCCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGGATGGTCTTCAGGAAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGTGATGCTGCAAGAAGTTCGGGAATTGAGGAAAGTCTACCAGATCCAGATTATGAATGTTATGTACCATTTACAAAGCGGGTCCCCATTGTTGCGatgacagcaaatgctttgtcagagagtgctgaagagtgttttgcaaatgagtga 2259 0.3971 MHGFDWDGRHVFDNHQEDFHHCHFEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQIINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAVVSLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGRVGINLYVVSKPNFAKAEDIQMMTPNQSTMSVNGVKEEQHLSKPQSGNDGNLLDGCQKHDDHPSQNHAFNDECGSPAKSECSMNGDTEEQPYSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDPDELSDLENNDVASDDTIESFFQFQPHTLGSLFSSNGSSRTQKLLTHKIGYTSSHKLGGFSESLYSKGTCSVDDASSVVDAPETSELASSSGHSLETKNKSLVRRDKQHQDKARAWSFNGYADSSEVTVSNGEMAGATKSSEPQQTCQGQGKANTTTQCVTSSSTSEVTKSTIKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMDGLQETKLIRTFEETGNCDAARSSGIEESLPDPDYECYVPFTKRVPIVAMTANALSESAEECFANE 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00533 752 CDD HATPase_EvgS-ArcB-TorS-like 253 443 - -
Gma06g00533 752 ProSiteProfiles Histidine kinase domain profile. 144 446 IPR005467 -
Gma06g00533 752 Pfam His Kinase A (phospho-acceptor) domain 139 202 IPR003661 GO:0000155|GO:0007165
Gma06g00533 752 MobiDBLite consensus disorder prediction 536 563 - -
Gma06g00533 752 Gene3D PAS domain 4 114 - -
Gma06g00533 752 SMART HisKA_10 137 202 IPR003661 GO:0000155|GO:0007165
Gma06g00533 752 ProSiteProfiles Response regulatory domain profile. 631 752 IPR001789 GO:0000160
Gma06g00533 752 MobiDBLite consensus disorder prediction 296 323 - -
Gma06g00533 752 Pfam Response regulator receiver domain 632 701 IPR001789 GO:0000160
Gma06g00533 752 MobiDBLite consensus disorder prediction 588 611 - -
Gma06g00533 752 SUPERFAMILY CheY-like 630 750 IPR011006 -
Gma06g00533 752 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 18 751 - -
Gma06g00533 752 Gene3D - 203 449 IPR036890 -
Gma06g00533 752 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 135 202 IPR036097 GO:0000155|GO:0007165
Gma06g00533 752 Gene3D - 623 752 - -
Gma06g00533 752 MobiDBLite consensus disorder prediction 296 359 - -
Gma06g00533 752 CDD HisKA 136 198 IPR003661 GO:0000155|GO:0007165
Gma06g00533 752 PRINTS Bacterial sensor protein C-terminal signature 406 424 IPR004358 GO:0016310|GO:0016772
Gma06g00533 752 PRINTS Bacterial sensor protein C-terminal signature 371 385 IPR004358 GO:0016310|GO:0016772
Gma06g00533 752 PRINTS Bacterial sensor protein C-terminal signature 430 443 IPR004358 GO:0016310|GO:0016772
Gma06g00533 752 SMART HKATPase_4 248 446 IPR003594 -
Gma06g00533 752 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 18 751 - -
Gma06g00533 752 Gene3D - 124 202 - -
Gma06g00533 752 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 232 443 IPR036890 -
Gma06g00533 752 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 444 IPR003594 -
Gma06g00533 752 SMART REC_2 630 751 IPR001789 GO:0000160
Gma06g00533 752 CDD REC_hyHK_CKI1_RcsC-like 632 750 - -
Gma06g00533 752 MobiDBLite consensus disorder prediction 537 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00533 Gma-Chr6 4627574 4634706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00533 5 751 Histidine Kinase Gene Family AT5G10720 55.599 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma06g00533 HATPase_c 1.7e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00533 - - gmx:100819520 1404.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00543 04 4872149 4877237 Gma06g00533 06 4627574 4634706 GST