Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00527 atggagaacaataatcatcatGCCATGGCTGCAGGTGCTAGTAGTGATTCAAACACTAGTGATCACACCACCCCAATATCTTCTTCTTGTGTTAATGATAACAACAACAATAAGTTATACAAAGGGGTGAGAAAGCGAAAGTGGGGGAAATGGGTTTCTGAAATCAGGCTTCCCAATAGCCGTGAACGAATATGGCTAGGGTCTTATGACTCTCCTGAAAAGGCAGCACGAGCCTTCGATGCTGCCCTTTACTGTCTACGTGGCCGCCATGCCAATTTCAATTTCCCCAACACACCTTGCAACATGGACACTGCTACCAATGCTCCTCCTAACCAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTCGCAAATCAGGTGTCCCCGCTACTACAAAAACCTCAAGAACAACCTCAACCTCAACGTAGTAGTGATGGTGGTGGCGGTGGTGCTAATTCTTCATCGTTTGGATCAAAGTTGTTATGTAAATCAGACAGCATAGCAGAGAGTAGTACTACTAGTACTACTACTAATTGTACCCCCACCACCACTGCCTCGTCATGTTCTGCTACTATGTACGAATGTGATGGAACGGAGCAAGTGGACCGTGGGGACATGATGGATTGGACATTCTTGAACGTCTTTGATTTCTCCAATGAGGTGGTGCTTCCTGCTGTTGGATCCGACTATAATGATCTCTATAATTCTGAGCTACACAAGATGCACTCAGATTCAGGTGAGTTATTGTATTCTACTCCTTTTGAGGGTTACGAACAATTAATTGAAGCTGATCATGATGATGATGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 858 0.4312 MENNNHHAMAAGASSDSNTSDHTTPISSSCVNDNNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPNTPCNMDTATNAPPNQSLTPQEIQEVAAKFANQVSPLLQKPQEQPQPQRSSDGGGGGANSSSFGSKLLCKSDSIAESSTTSTTTNCTPTTTASSCSATMYECDGTEQVDRGDMMDWTFLNVFDFSNEVVLPAVGSDYNDLYNSELHKMHSDSGELLYSTPFEGYEQLIEADHDDDDPFSHQSFLWNWNF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00527 285 MobiDBLite consensus disorder prediction 1 35 - -
Gma06g00527 285 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gma06g00527 285 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gma06g00527 285 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Gma06g00527 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 26 285 - -
Gma06g00527 285 MobiDBLite consensus disorder prediction 134 157 - -
Gma06g00527 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00527 Gma-Chr6 4475795 4477321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00527 40 139 AP2-EREBP Transcription Factor Family AT1G74930 67.000 1.92e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma06g00527 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00527 - - gmx:100817386 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00527 06 4475795 4477321 Gma06g00527 06 4475795 4477321 ECH
Gma04g00534 04 4779402 4780875 Gma06g00527 06 4475795 4477321 ECH
Gma04g00534 04 4779402 4780875 Gma06g00527 06 4475795 4477321 GST