Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00516 ATGAGTTCTAAAAAGATTACATGGAAGTCTATAGTGTTGATCTTAAGTTGTAACAAGACTTCAGAAAAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTCTCGGATATAAGCATTCCCAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCATTTCCCTGGTTGGCCCAAAACTTCACACATTCACACTAGATGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGTAATTTTCTGGGTGAAGGCGGGTTCGGACCCGTGTACAAGGGTTTTGTTGATGATAAACTTAGACCTGGTTTGAAGGCTCAGCCTCTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATAGGGTACTGTTGTGAGGATGAGCACAGGCTTCTGGTGTATGAATACATGGCAAGAGGCAGCTTGGAGAATCAACTGCACAGAAGATACTCTGCTGCCTTACCATGGTCAACCAGGATGAAGATTGCATTGGGTGCAGCCAAGGGTCTCGCCTTCCTACATGAAGCAGATAAACCTGTGATATACAGAGATTTCAAAACTTCAAATATCTTACTAGACTCGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCAAAGGATGGTCCTGAAGGGGAAGCCACACATGTAACAACAACATGCATAATGGGAACCCGAGGCTATGCTGCTCCTGAGTACATCATGTCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTGGTTTTGTTGGAATTGCTTACGGGAAGAAGGGTAGTGGATAAATGCGGGTCGAATCGAGAACAAAGCCTGGTGGAATGGGCAAGGCCTCTTTTGAGGGATCAAAGAAAGCTGCACCATATAATAGACCCAAGATTGGAAGGGCAGTTTCCTATGAAAGGAGCTTTGAAGGTTGCTGCATTGACTTACAAATGCTTGAGCCGCCACCCCAATCCAAGGCCTTCTATGAGTGATGTTGTAAAAATACTAGAATCACTTCAGGACTTTGATGATGTGATCATAGGACCATTTGTTTATGTGGCCGGGTGA 1125 0.4462 MSSKKITWKSIVLILSCNKTSEKQVLKQGSFQRLCLSDISIPSSPQAIEDLSISISLVGPKLHTFTLDELREATHNFSWSNFLGEGGFGPVYKGFVDDKLRPGLKAQPLAVKQLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMARGSLENQLHRRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEATHVTTTCIMGTRGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGRRVVDKCGSNREQSLVEWARPLLRDQRKLHHIIDPRLEGQFPMKGALKVAALTYKCLSRHPNPRPSMSDVVKILESLQDFDDVIIGPFVYVAG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00516 374 PANTHER OS01G0588500 PROTEIN-RELATED 17 373 - -
Gma06g00516 374 PANTHER KINASE 1B 17 373 - -
Gma06g00516 374 SUPERFAMILY Protein kinase-like (PK-like) 57 357 IPR011009 -
Gma06g00516 374 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
Gma06g00516 374 Gene3D Transferase(Phosphotransferase) domain 1 160 365 - -
Gma06g00516 374 Gene3D Phosphorylase Kinase; domain 1 43 159 - -
Gma06g00516 374 ProSiteProfiles Protein kinase domain profile. 77 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g00516 374 CDD STKc_IRAK 83 358 - -
Gma06g00516 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00516 Gma-Chr6 4399927 4402906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00516 42 355 Glycoside Hydrolase AT3G07070 48.615 5.11e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma06g00516 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00516 - - gmx:100813130 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00516 06 4399927 4402906 Gma06g00516 06 4399927 4402906 ECH
Gma04g00526 04 4692713 4695673 Gma06g00516 06 4399927 4402906 ECH
Gma09g00640 09 7260471 7264012 Gma06g00516 06 4399927 4402906 ECH
Gma07g00373 07 3334683 3336610 Gma06g00516 06 4399927 4402906 ECH
Gma04g00526 04 4692713 4695673 Gma06g00516 06 4399927 4402906 GST