LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00487	ATGGAGGATCTCGAGGAGGAAGAGAACGGAGCGGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAGAAGGTGGCGGCGGCGAAGAAGTTCATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTTTTAGAAAGAAAATTGGCGTCATCGGATGTGCCAAATGAGGAACGGATCAACCTCATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGACACAAGATTTGTGTTAATGATTTTGAACTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAATTTGCTGGCTGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATATTATGACTTTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTACATTGCACAAAGTGTTCTGGCCATAGAATCTATTCACAAACACAACTACATTCACAGAGATATTAAACCTGATAACCTTCTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGATTGTAATGCCTTGTCTACACTGCATGAAAATCAGACCATAGATGATGAAACTTTGGCAGAACCAATGGATGTTGATGATGCGGACAATCGAAGTAGCTGGAGAAGTCCACGTGAACAGCTTCAACATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCTCCATTTTTCTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAGATTTCCAGATGAGGCCCAGTTAACACTTGAGGCTAAGGATCTAATTTATAGGTTGCTGTGTGATGTTGATCATAGGCTAGGTACTCGAGGAGCCAATGAAATAAAGGCTCATCCTTGGTTCAAAGGTGTGGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAACGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCTACAGCAGCAAGAACTGGGTCTGGATCCTCACGAAAGATGCTAACTACCAAAGATCTAAGCTTTGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAGGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGAGTATGCTTCTAAACGGGCAGCTGAAGAGACAAGTTTACAAATGCTTGCATCCTCTGGAGATCCCATGGTACCATAG	1512	0.4259	MEDLEEEENGAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDIMTLLMREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCNALSTLHENQTIDDETLAEPMDVDDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFFSDDPITTCRKIVHWRNHLRFPDEAQLTLEAKDLIYRLLCDVDHRLGTRGANEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPTAARTGSGSSRKMLTTKDLSFVGYTYKNFDAVKEGLRQSFGDSMQEYASKRAAEETSLQMLASSGDPMVP	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g00487	503	PANTHER	SERINE/THREONINE-PROTEIN KINASE	13	484	-	-
	Gma06g00487	503	Pfam	Protein kinase C terminal domain	415	459	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Gma06g00487	503	Pfam	Protein kinase domain	94	242	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g00487	503	Pfam	Protein kinase domain	288	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g00487	503	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Gma06g00487	503	ProSiteProfiles	Protein kinase domain profile.	93	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma06g00487	503	CDD	STKc_NDR_like	91	460	-	-
	Gma06g00487	503	ProSitePatterns	Protein kinases ATP-binding region signature.	99	122	IPR017441	GO:0005524
	Gma06g00487	503	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	13	484	-	-
	Gma06g00487	503	Gene3D	Phosphorylase Kinase; domain 1	415	425	-	-
	Gma06g00487	503	Gene3D	Phosphorylase Kinase; domain 1	91	176	-	-
	Gma06g00487	503	SMART	pkinase_C_6	397	461	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gma06g00487	503	Gene3D	Transferase(Phosphotransferase) domain 1	295	414	-	-
	Gma06g00487	503	ProSiteProfiles	AGC-kinase C-terminal domain profile.	397	469	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gma06g00487	503	Gene3D	Transferase(Phosphotransferase) domain 1	177	242	-	-
	Gma06g00487	503	SUPERFAMILY	Protein kinase-like (PK-like)	76	446	IPR011009	-
	Gma06g00487	503	SMART	serkin_6	93	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00487	Gma-Chr6	4159698	4169169	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00487	1	502	AGC Kinase Gene Family	AT4G33080	80.000	0.0	833

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Gma06g00487		Pkinase	5.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00487	K08790		-	gmx:100805455	1012.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00497	04	4430156	4450047	Gma06g00487	06	4159698	4169169	GST