Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00479 ATGGCTGGGTCGGCACCCGAAGGATCACAATTCGATGCTCGTCAATATGATGCTAAGATGAATGAGTTACTTGGAACTGATGGGCAAGATTTTTTTACTTCTTATGACGAAGTTTGTGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTATGCATACGAAGGTTTTGAGAAGCCCTCTGCAATTCAACAAAGGGGGATTGTTCCTTTCTGCAAGGGGCTTGATGTTATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCCACCTTTTGTTCTGGAGTTTTGCAGCAGCTTGATTATAGCTTAGTTGAATGCCAGGCACTGGTTCTTGCTCCCACTCGTGAACTTGCACAACAAATTGAAAAGGTCATGCGAGCACTGGGGGACTATCTTGGTGTCAAGGTCCATGTTTGTGTTGGTGGGACCATTGTTCGTGAAGATCAACGCATCCTCTCAAGTGGGGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGACATGCTGTGCAGACAATCTTTGCGCCCTGATAACATCAGGATGTTTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAGTTTATGAACaaacctagcgttatcttTGTGAACACCAGACGCAAAGTAGATTGGCTGACAGACAAAATGCGGAGTCGTGATCACACAGTTTCAGCCACTCATGGAGATATGGACCAAAACACAAGGGATATCATCATGCGGGAATTCCGTTCTGGGTCGTCCCGTGTTCTTATTACCACAGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTTATAAATTATGACCTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGACGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACAGGAGATGATGAAAGGATGCTATTTGACATCCAAAAGTTTTATAATGTGCAGATTGAGGAGTTGCCAGCCAATGTAGCTGATCTCATTTGA 1116 0.4427 MAGSAPEGSQFDARQYDAKMNELLGTDGQDFFTSYDEVCESFDAMGLQENLLRGIYAYEGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHVCVGGTIVREDQRILSSGVHVVVGTPGRVFDMLCRQSLRPDNIRMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGDDERMLFDIQKFYNVQIEELPANVADLI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00479 371 CDD SF2_C_DEAD 237 341 - -
Gma06g00479 371 PANTHER EUKARYOTIC INITIATION FACTOR 4A-9-LIKE 240 371 - -
Gma06g00479 371 PANTHER EUKARYOTIC INITIATION FACTOR 4A-9-LIKE 22 239 - -
Gma06g00479 371 CDD DEADc_EIF4A 44 243 - -
Gma06g00479 371 Gene3D - 260 351 IPR027417 -
Gma06g00479 371 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 242 IPR014001 -
Gma06g00479 371 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 69 IPR014014 GO:0003724
Gma06g00479 371 SMART helicmild6 251 332 IPR001650 -
Gma06g00479 371 Pfam DEAD/DEAH box helicase 66 227 IPR011545 GO:0003676|GO:0005524
Gma06g00479 371 PANTHER RNA HELICASE 240 371 - -
Gma06g00479 371 PANTHER RNA HELICASE 22 239 - -
Gma06g00479 371 SMART ultradead3 60 256 IPR014001 -
Gma06g00479 371 Pfam Helicase conserved C-terminal domain 234 332 IPR001650 -
Gma06g00479 371 Gene3D - 31 250 IPR027417 -
Gma06g00479 371 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 188 196 IPR000629 -
Gma06g00479 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 352 IPR027417 -
Gma06g00479 371 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 230 371 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00479 Gma-Chr6 4091999 4094255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00479 1 371 Eukaryotic Initiation Factors Gene Family AT1G72730 77.831 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00479 K03257 - gmx:100790090 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00489 04 4353038 4356182 Gma06g00479 06 4091999 4094255 GST