Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00451 ATGATCCCAAACGTTGAAATCCCTCACTGGGACGCCGACGGAGGAGGACCACTCTCTCCGTTCATCTCTTCTTCTTCCAATGCTGACAAGTGCTCATTATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTCCGGATCTGTCCACGTGGCAGGTCCCACGATTGGACGGAGTGTCCCTACGCCCACCCTGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCCGGCACCGCCTGCCCCGATTACCAGAAGGGGAACTGCAAGAGGGGCGACACTTGTCAGTTCTCGCACGGCGTCTTCGAATGCTGGCTCCATCCTTCTCGCTACCGGACCCACCTCTGCAAAGACGGAACCACTTGCCGCCGCAGAGTCTGCTTCTTCGCTCACACCACCGAACAACTCCGCCTCGTAGTAACGGATTCATCATCGTCCTCCTTTGTTTCCTCTCCCACTTCGGTCCTCAACTCTTCGTCCTTCTCCGATTCTTCGCCGTACAGCTTCGTGCGCGAAATAGTTAACTCAACGCGGAATGTTAAAATCGAGGATTCGGGTTTGACCCGTTGCGTGTTTGGGTCGCCACGTGGCGGGTTTTTAAGTGTGAATGGGTGCGAGGAGGAGCCTGCTATGGAGAGGGTGGAATCTGGGAAAGACATTAGAGCGAGAATCTATGCCAAGCTTAGTAGGGAGAACACGATTGGAGCCTCTGACCCTGACATTGGATGGGTTTCGGAACTCGTCAAATGA 762 0.5499 MIPNVEIPHWDADGGGPLSPFISSSSNADKCSLLFSSDHFRMFQFKVRICPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYQKGNCKRGDTCQFSHGVFECWLHPSRYRTHLCKDGTTCRRRVCFFAHTTEQLRLVVTDSSSSSFVSSPTSVLNSSSFSDSSPYSFVREIVNSTRNVKIEDSGLTRCVFGSPRGGFLSVNGCEEEPAMERVESGKDIRARIYAKLSRENTIGASDPDIGWVSELVK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00451 253 Gene3D - 78 142 - -
Gma06g00451 253 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 24 253 - -
Gma06g00451 253 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Gma06g00451 253 SMART c3hfinal6 114 137 IPR000571 GO:0046872
Gma06g00451 253 ProSiteProfiles Zinc finger C3H1-type profile. 80 106 IPR000571 GO:0046872
Gma06g00451 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 104 IPR000571 GO:0046872
Gma06g00451 253 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Gma06g00451 253 PANTHER UNKEMPT FAMILY MEMBER 24 253 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00451 Gma-Chr6 3884609 3885856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00451 29 161 C2H2 Transcription Factor Family AT5G12850 59.028 2.60e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma06g00451 zf-CCCH 2.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00451 - K23048 gmx:100786368 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00451 06 3884609 3885856 Gma06g00451 06 3884609 3885856 ECH