Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00439 ATGAATTTCAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACCACCGAAGACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCCGACTCCACAATATCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTTGGCTTTGTCACTTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCGATTCCCAGGAGTGAACAACATCAACACCAAAACCAATTACAGAGTAGAgtggaggtgaagagggctgttccgaaagaAGGGAACCATGGCTATGATGGGTTTAGTAAATTCAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTGCCTCCTTATAGTCCTAGGAATATGTTCCCGGGTTTCTCACCTTCGCCGTGGTATAGTGGTGATGGAGTATATGCATATGGGTCTAATGCGTATGGTTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGTTATGCGGTTTTGTGTGATGCTCCTAGGAACTTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTACACTAGTGCTGTTCCGGATGTTGTGTATGTGGGGGGTAGGATTGGAGTAGTAGGTAGTGGTGCTGGATCTTGGGGGTACAGTGGCATTCTTGGACCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAATGGATTTGTTCCTGGCAATGTGACATCACTTCATGGTGTACAGCAGGATGTTATCGACTCGTCAAGTCTTAAAGGAAGCAATGGTGGAATTTCTAGTTGA 846 0.4586 MNFKMDSDRAKLFVGGISRDTTEDVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNQLQSRVEVKRAVPKEGNHGYDGFSKFRNKSERGVPKSLPPYSPRNMFPGFSPSPWYSGDGVYAYGSNAYGCWYPVGGYGGNGYAVLCDAPRNFWYGPMMTGPQACQVPYTSAVPDVVYVGGRIGVVGSGAGSWGYSGILGPATNLKFDQAFNANGFVPGNVTSLHGVQQDVIDSSSLKGSNGGISS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00439 281 Gene3D - 2 98 IPR012677 -
Gma06g00439 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gma06g00439 281 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Gma06g00439 281 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gma06g00439 281 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 100 278 - -
Gma06g00439 281 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 96 - -
Gma06g00439 281 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 100 278 - -
Gma06g00439 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Gma06g00439 281 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00439 Gma-Chr6 3735827 3737107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00439 6 69 C2H2 Transcription Factor Family AT2G19380 36.364 4.42e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00439 K14411 - gmx:100816822 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00442 04 3913464 3915130 Gma06g00439 06 3735827 3737107 GST