Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00396 ATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTGTGGCATATAATTTTTCATCTTCTTTAGGTTCCCTCCTTCCCTTGATCTCTCTTTCTCATGCATTGCCCTTTTGTTTCTTTCTTTCTTTCTGTTTTACAGTTTCAATCACACTCCGTTATGGTTATTACGGCGATTCTTGCATCCTGCTTGGCCCTGCCTCATCCCGTTTGATGAAGACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACAAGGACAATAATCAAGTTATTCTTCATGCCTTCAATGAGAAGCCCGAGTTAAGCTCCCAAACTAATTGGACAGTGTCAAATTTGTGTCTTGTTGAAGCGTATAAAAGCAAGGGAATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATGGGGTGGGAAGCACACACTACTAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGAAGTTTAAACTGCCACAGGCTAAACAAACGAGCTTCCCCAATGCAATGGCTCTTCACAAGATTGTTAATGGTAAAGAAGCTGAATACAAGGTTGAGGAAGATAATATGTACCACATGGGGGTTCTAAACATGAATGCCAGGAACATTATCTTGAATATGAAAGTTAATGTTTCGGCAAAGGTATATGATACCACCAAAGGCAAGAAGATGTGCTCTACTGCAAATGGATCGTGTAGGCTCAGTTTTGTCTTCCCTAATACTCAGTATGTTATTTTTACGGCACCTGGCAAAGGAGATGGGGGTTCGTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATATTACTTTTAGGAGCTCTTATGATTGTTGTTTATCTGATTCTGAAGTTCCTTGGAGTCTATGATGGTGGTGATCGGAATAGTCGTGTGACTGTCGACGCCACATACAGAACAAGTGATGTAGTGGCAAGGCAAACCGAAACTGAGCCCTTGATGCAAGTGGAGACAAATCGATGGACATATGGAACAAATGCAAAAGATGACGAAGAAGAAGATTCAGGAGCATCCAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTACGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGGCATTGTGCCACTTGCTATGACTGTGCAGAGAGGATTGTAGATGGGGAGAGCAAAGTGTGCCCTATATGCCGAAGGCTTATTCACAAAGAACATAGTGTTTTGACCCAAATCGCCACAGCCAGCCAGCTGGTGATAGGAAGTGATTATATCAGCTTTAGAATTATGGATAGAAAGTTCACAACGATGTGTCGAATTTTAATCTTCAATCTTGAAAATAAATATTCCCAAGCTAAAGTGCGCCAAGTGGTTAGCCAAAAATTAAAGGGTCTACAGCAAAGACTCCGTGTGTGGTTTGAAATGGTGTTGCAACTGTTCCCGTGGACTATTACATGCCAATTTTTCACTACACTCGTTCTTTCACCTGTCAAGGGCTCCAACATTGTTCTCAGTGGAGAACAAATGTCATTTTCTCTATTGCAGTCTGAAATCTCACATCACAGCAACCCGATTTTAGATGAAGATTTTCTGAATTTGCAAGAAGCTTTGCAACTGAATAAACTCGTGCATGTGCTTGGCTTGGAACAATCAACATAA 1665 0.4126 MLGCCLLSPFGFVAYNFSSSLGSLLPLISLSHALPFCFFLSFCFTVSITLRYGYYGDSCILLGPASSRLMKTSSVFVKQLQVSNKDNNQVILHAFNEKPELSSQTNWTVSNLCLVEAYKSKGISLWLNQGSTIRMGWEAHTTSSLDQLHGMVIKGEKKFKLPQAKQTSFPNAMALHKIVNGKEAEYKVEEDNMYHMGVLNMNARNIILNMKVNVSAKVYDTTKGKKMCSTANGSCRLSFVFPNTQYVIFTAPGKGDGGSYVEISFLARVLTYILLLGALMIVVYLILKFLGVYDGGDRNSRVTVDATYRTSDVVARQTETEPLMQVETNRWTYGTNAKDDEEEDSGASSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAERIVDGESKVCPICRRLIHKEHSVLTQIATASQLVIGSDYISFRIMDRKFTTMCRILIFNLENKYSQAKVRQVVSQKLKGLQQRLRVWFEMVLQLFPWTITCQFFTTLVLSPVKGSNIVLSGEQMSFSLLQSEISHHSNPILDEDFLNLQEALQLNKLVHVLGLEQST 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00396 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 412 IPR013083 -
Gma06g00396 554 SMART ring_2 361 400 IPR001841 -
Gma06g00396 554 PANTHER OS05G0521000 PROTEIN 39 410 IPR044586 GO:0004842
Gma06g00396 554 Pfam Domain of unknown function (DUF4793) 184 285 IPR032010 -
Gma06g00396 554 Pfam Domain of unknown function (DUF4792) 91 159 IPR032008 -
Gma06g00396 554 ProSiteProfiles Zinc finger RING-type profile. 361 401 IPR001841 -
Gma06g00396 554 SUPERFAMILY RING/U-box 352 407 - -
Gma06g00396 554 Pfam Zinc finger, C3HC4 type (RING finger) 358 405 - -
Gma06g00396 554 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 39 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00396 Gma-Chr6 3412361 3416700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00396 - - gmx:100794488 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00396 06 3412361 3416700 Gma06g00396 06 3412361 3416700 ECH
Gma04g00410 04 3561682 3564283 Gma06g00396 06 3412361 3416700 GST