Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00378 ATGGTCAGCAGATTTAATGGCGCTGATGTCAAGCCGTTAATCATGGCTCACGCATTCTCCGTCATCGCGTCTTCTCCCTCTCTGCCGACACCTTCGCCGCCGATCCCGTCTTGGTCTCCACCGCCGCCAAAATCAAAGAGACGCGGTGGCTCTGGCGGCGCTCCAAGACCCAGCTCCAGTGGCTCCTATGATTCCCCCTCGGGACCCGTCCCTCTGGTCGTGTTTTCTTCTGGTCCTACGTTTTCTACACATGTTGCGCACCGTCTTCGTCGTCGTAAGCTCGTTTTCTTTCAGCTCTTCTACCACGCCATTTCCGCGTTCATGTCTTTCCTGTGGCTGGAGTTCTCGCGATCCTCTTCACCACGCTCCCGTTCTCCGTTATGTTTGGTTACAGGTTCTGGACCGCAGTACGTGGCGGCGCAAGGCGAGTGCCTGCCACTCGTGCTCAACTGCCAGATTGCGCTGCTCGGGTGCAACTTGGTTTGCCACGTGGCGGTGTCTTGTTGCATTTTTTTACAGGTGGAATCTCCTCTCGACACCTTTGCTTTGCTGCAGCTCGCAACTGCAACTTCCCACAAATATAAATATATATTACTTCATGATATGGAAGAAGCGGGTTTAGGAGATTGTTGTTCCTCTAATACGACTATTACGAGGAAAAGCGAGAAGCGAAAGCAGCAGCACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTTAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAAGATGTCCGCCGATTCAATTCGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCGACACACTCCATTAGTTCCAGCCACGTCAGCTATGAGAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAG 1083 0.5439 MVSRFNGADVKPLIMAHAFSVIASSPSLPTPSPPIPSWSPPPPKSKRRGGSGGAPRPSSSGSYDSPSGPVPLVVFSSGPTFSTHVAHRLRRRKLVFFQLFYHAISAFMSFLWLEFSRSSSPRSRSPLCLVTGSGPQYVAAQGECLPLVLNCQIALLGCNLVCHVAVSCCIFLQVESPLDTFALLQLATATSHKYKYILLHDMEEAGLGDCCSSNTTITRKSEKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGKMSADSIRKKATQVGARVDALQTALQQSSSTHSISSSHVSYEKPDLNEYPKPED 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00378 360 MobiDBLite consensus disorder prediction 328 348 - -
Gma06g00378 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 212 360 - -
Gma06g00378 360 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 CDD AP2 235 293 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 MobiDBLite consensus disorder prediction 27 43 - -
Gma06g00378 360 MobiDBLite consensus disorder prediction 328 360 - -
Gma06g00378 360 Pfam AP2 domain 235 283 IPR001471 GO:0003700|GO:0006355
Gma06g00378 360 MobiDBLite consensus disorder prediction 27 66 - -
Gma06g00378 360 Gene3D AP2/ERF domain 234 292 IPR036955 GO:0003700|GO:0006355
Gma06g00378 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 212 360 - -
Gma06g00378 360 MobiDBLite consensus disorder prediction 297 312 - -
Gma06g00378 360 MobiDBLite consensus disorder prediction 297 316 - -
Gma06g00378 360 SUPERFAMILY DNA-binding domain 234 292 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00378 Gma-Chr6 3235358 3239755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00378 228 360 AP2-EREBP Transcription Factor Family AT2G23340 58.333 7.11e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g00378 AP2 8.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00378 K09286 - gmx:732579 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00378 06 3235358 3239755 Gma06g00378 06 3235358 3239755 ECH