Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00309 ATGATATGTATTATGTTTGAGTTGGATAGAGTTATGAACTCTAACATGAGAATTAAGTGTCCTCTCTCTGTTCGCCCATTCCAGAGATCAGAAAGAGGAACCAGCCTATCGCATATCCACCGCAACGCCAACGACTTCAAAGCTCCTCTTGCTCTCTCTCAGCCTCGCCACGCGCCAACACCACACTCTCTCTCTACAAAAATCAGAGTCCTCGCTTCTCACTTCGAACATTGCTTATTCATCTCTCTCGAATCGAAATCTCTGTTCGTCACTCCTTTCTCCGCATCGTCGAACGTCCAAAATGCATCTCAGCCAGAGATTCTCGCGCGTTCCGAAGCCGATCGAAAATTCGCCGGCGAATTGATGGAATCGGAGAGATTTCATTGCAAGCTTCGATTCGCTGTGATTGTTTTCGAGATTATATTGATATTGGCATGGGTGGAGGCCCACAATGCGAAGTCCCATGAACACCAACTTCAATTGGGAGGCTTGGAGAGGAATACCGAGAACATTGCCTCACACTCTTGCATACATGACCAGATTCTTGAACAGAGGAAGCGACCTGGTCGCAAGGTGTATTCAATTACCCCACAGGTTTATGAGCCTGGTCGCTTGAAACCCCCTCAGCATAAAGGTAGGACATTACTTGATGTGTCAACATCATCAAGGCCTCAAGAGGATGCAAAGAAGCCTATTAGGATATATCTAAATTATGATGCTGTTGGCCACTCCCCTGACAGGGATTGTCGAGCAATTGGCGATATTGTCAAACTTGGGGAGCCTCCCATGACTTCTCCTGGTTTTCCTTCTTGCAATCCTCATGCTATTCCTCCAATCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGAAGATGACAAAAAATGTCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTCAAGGGGAACCTGCGGTTGAGTGGATATTCTGCGTGTGGACAAGATGGAGGTGTGCAGCTTCCTCGTGGATATATTGAGGAGGGTGTATCTGATGCCGACTTGGTTCTTTTGGTGACTACAAGACCTACAACTGGAAATACACTTGCCTGGGCAGTGGCATGTGAACGAGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCGCCTCGCCATTTGACTGCCGAGGCAGAGACTTTGCTTTCAGCTACTCTGATACATGAGgttATGCATGTTCTTGGTTTTGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGGCGTAATCAGGTTACTGAACAAGTTATGGATGAAAAACTTGGACGAATGGCAACACGTGTGGTGCTTCCTCGTGTTGTCATGCATTCTCGATATCATTATGCGGCTTTCTCAGGAAATTTTTCTGGTTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGATCTCACTGGGAAAAAAGGCTTCTTATGAATGAGATTATGACTGGTTCTGTGGATACAAGATCTGTTGTTTCAAAAATGACATTAGCTCTATTAGAAGATAGTGGGTGGTACAAGGCCAATTATAGTATGGCAGACCATCTTGATTGGGGTCGCAACCAAGGTACTGAGTTTGTTACCTCTCCTTGCAATCTATGGGAGGGAGCCTATCGTTGCAACACAACACAGTTTTCTGGCTGTACGTATAACAGGGAGGCAGAGGGATACTGCCCCATCCTAACTTATAGTGGAGATCTCCCTCGGTGGGCTCGGTATTTTCCTCAAGCTAATAAGGGTGGACAATCCTCGTTGGCTGATTATTGCACTTATTTTGTTGCTTACTCTGATGGATCATGTACAGACACTAACAGTGCACGAGCACCTGACAGAATGCTAGGTGAAGTCAGAGGAAGTAACTCTAGGTGTATGGCTTCATCACTAGTACGCACAGGCTTTGTACGAGGTTCTATGACCCAGGGAAATGGTTGCTATCAGCACAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGTGTGTCCTCAAGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTACTCTGCCCTGCTTACCATGAGCTCTGTAACACTGACCCAGTAGCTGTGTCTGGTCAATGCCCTAATTCATGTAATTTCAATGGAGATTGTGTTGATGGAAAATGCCGATGCTTTCTTGGATTTCATGGGAATGATTGCAGTAGACGTTCCTGCCCCAGCAAATGCAATGGCAATGGAATGTGTCTTTCCAATGGGATTTGTGAATGTAAACCTGGCTACACTGGCATTGACTGCTCCACTGCTGTGTGTGATGAGCAATGCAGCCTTCATGGTGGGGTTTGTGATAATGGAGTTTGTGAATTTCGCTGTTCTGACTATGCGGGATACACATGCCAGAATAGCTCCATGCTCCTATCTAGCCTTTCGGTGTGCAAAAATGTGCTGGGAAATGATGTTTCTGGACAGCATTGTGCACCCAGTGAGCCTAGCATACTACAGCAACTGGAAGAGGTTGTTGTCATACCCAACTACCACCGACTATTCCCTGGTGGTGCTAGAAAATTATTTAATATATTTGGCAGCTCCTACTGTGATGAGACTGCTAAACGGCTTGCCTGCTGGATCTCAATCCAGAAGTGCGACAAGGATGGAGACAACAGGCTTCGAGTGTGCCATTCTGCATGCCAGTCTTATAATCTAGCATGTGGAGCTTCACTTGACTGCTCTGATCAGACGCTTTTCAGCAGTGACGGGGAAGGGGAGGGTCAATGCACTGGCTCGGGTAGAGAAGAGAACAAGATGATAGTGGTGAAAGGCGATGCCCAGGCTGCAGACAAACCAAATTTTGAGTCACACATACATGATACCCCCTCCTCACTATTCACTTCCTCAACCGATCCATTTTTCTTAGTTTTTCGCTTTCCTCAGATGGCAAGTGGGTTTGGGGAATCAACAGGGAGGTCACCCCCAAGCCCTTCCTACTTCAACAACAATAATAACAGCGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGAGAATGCCCGGTGTGCAAGGCTCTCGTGGAGGAGGAGAAATTGGTTCCCTTGTATGGGAGAGGAAAGTCGTCCACTGATCCGAGATCAAAATCTATTCCGGGCGTTAACATCCCACATCGTCCGGCTGGGCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGGGGATTTGTGCCACCGCCGATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCGCAGCATTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGATGCATGGGTTTCATGATGCGGCCATGTATGGGGGAGGGGCTGGTTTTCCACATGGATTTGCTAATACATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTGCTTCTATTTGTTGTTTTCTGTGTTGTTCTTGCTTTTATATGGCAATAG 3660 0.4615 MICIMFELDRVMNSNMRIKCPLSVRPFQRSERGTSLSHIHRNANDFKAPLALSQPRHAPTPHSLSTKIRVLASHFEHCLFISLESKSLFVTPFSASSNVQNASQPEILARSEADRKFAGELMESERFHCKLRFAVIVFEIILILAWVEAHNAKSHEHQLQLGGLERNTENIASHSCIHDQILEQRKRPGRKVYSITPQVYEPGRLKPPQHKGRTLLDVSTSSRPQEDAKKPIRIYLNYDAVGHSPDRDCRAIGDIVKLGEPPMTSPGFPSCNPHAIPPIFGDCWYNCTSEDISEDDKKCRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRGYIEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNQVTEQVMDEKLGRMATRVVLPRVVMHSRYHYAAFSGNFSGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADHLDWGRNQGTEFVTSPCNLWEGAYRCNTTQFSGCTYNREAEGYCPILTYSGDLPRWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGIWKVCPQAGGPIQFPGFNGELLCPAYHELCNTDPVAVSGQCPNSCNFNGDCVDGKCRCFLGFHGNDCSRRSCPSKCNGNGMCLSNGICECKPGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSMLLSSLSVCKNVLGNDVSGQHCAPSEPSILQQLEEVVVIPNYHRLFPGGARKLFNIFGSSYCDETAKRLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCSDQTLFSSDGEGEGQCTGSGREENKMIVVKGDAQAADKPNFESHIHDTPSSLFTSSTDPFFLVFRFPQMASGFGESTGRSPPSPSYFNNNNNSDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSSTDPRSKSIPGVNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFVPPPMATTRFGNFALSAAFGGFIPSLFNFQMHGFHDAAMYGGGAGFPHGFANTFHGVHAHGFPLRTHQGQQDYYLKKLLLFVVFCVVLAFIWQ 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00309 1219 Pfam Leishmanolysin 285 710 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma06g00309 1219 PRINTS Leishmanolysin (M8) metalloprotease family signature 512 541 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma06g00309 1219 PRINTS Leishmanolysin (M8) metalloprotease family signature 359 388 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma06g00309 1219 SMART ring_2 1020 1060 IPR001841 -
Gma06g00309 1219 Gene3D - 707 749 - -
Gma06g00309 1219 MobiDBLite consensus disorder prediction 200 222 - -
Gma06g00309 1219 CDD RING-HC_AtRMA_like 1018 1062 - -
Gma06g00309 1219 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 125 943 - -
Gma06g00309 1219 Gene3D Leishmanolysin domain 3 552 611 - -
Gma06g00309 1219 ProSitePatterns Zinc finger RING-type signature. 1035 1044 IPR017907 -
Gma06g00309 1219 Gene3D Leishmanolysin domain 4 613 706 - -
Gma06g00309 1219 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 125 943 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma06g00309 1219 SUPERFAMILY RING/U-box 1015 1066 - -
Gma06g00309 1219 Gene3D - 225 414 - -
Gma06g00309 1219 MobiDBLite consensus disorder prediction 1074 1106 - -
Gma06g00309 1219 Pfam Zinc finger, C3HC4 type (RING finger) 1020 1060 IPR018957 GO:0046872
Gma06g00309 1219 ProSitePatterns EGF-like domain signature 2. 766 777 IPR000742 -
Gma06g00309 1219 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 227 714 - -
Gma06g00309 1219 ProSitePatterns EGF-like domain signature 1. 766 777 IPR000742 -
Gma06g00309 1219 Gene3D Laminin 750 780 - -
Gma06g00309 1219 ProSiteProfiles Zinc finger RING-type profile. 1020 1061 IPR001841 -
Gma06g00309 1219 ProSiteProfiles EGF-like domain profile. 746 778 IPR000742 -
Gma06g00309 1219 Pfam EGF-like domain 750 777 IPR013111 -
Gma06g00309 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1074 IPR013083 -
Gma06g00309 1219 Gene3D Leishmanolysin , domain 2 424 549 - -
Gma06g00309 1219 SMART egf_5 749 778 IPR000742 -
Gma06g00309 1219 SMART egf_5 718 746 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00309 Gma-Chr6 2703121 2719353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00309 1018 1202 C3H Transcription Factor Family AT1G19310 66.839 4.81e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00309 K01404 - gmx:100775874 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00326 04 2790896 2792705 Gma06g00309 06 2703121 2719353 GST