Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00300 ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTCCAGCGTTAGAAATCGCACCTCAAACTCAACCACTGCCACCTCCCAAAAAGAAACGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACcgtttcgtgtgcgagatctgcaacaaaggcttccagcgcgaccagaatctacagcttcaccgacgcggccacaacttgccgtggaagctgcggcagcgagggagcaaagaaccgcagaagaaagcttacGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCAAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGCAATGCGAACGCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGCGCAAGGGCCCAGGACCAAGCCCAAGGTGGTAGCAGCAATAGCTACGTGGTTGTTGTGTCTTCTTCGCCGCCTACGCCTCCACTCACTCCCTCTGCGTCTGTGGTGTCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGGTGTCACCGACGTCTCCAAACGCATCGTGTTTCGTGACAAGCAGCAGCAGCACCCCCTCCAGTACCACCAGTGTTTTTGCAAGTGTTTTAGCACCGTCGACAACACCAACAACTCCTTCACAATCACCATCAAATTCAACTTGTTCATTCTCCAACCTCATGTCAAACTTGGCTCGTTCGGAAAACTCCAATGCCTTAATGAGAGAACCCACATCCCTCTCCCTCTCCACACCACCCTATCACTCCAACAATGACCCTCTTCATTACACTGCATTACCCCAACCTGCACTATCTGCCACTGCACTACTCCAGAAGGCAGCTCAGATGGGTGCTTCAAATGCATCCCTTCTTCGTGGATTAGGCTTAGCAAGAACATCCTCCTCCTTCGGGAAAGACGAGGGTGTTAACATTAATGCAACCACAACATTACAATGGAATGGCCAAGTGAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCCATGTGGGAGTGGGAGTGTGCCAGATGTGATGATGGGCCCTACTACTCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCGTCGGTGGCGGGGCAACAAGCAGGGGTGGTCTCTCTGCTTTACTCACCTCTTTTGGAGGAAACTTTGATTCGCCGAGTGAGGGAGGAGTTCACCGGTAG 1410 0.4709 MTEPQNPSPLTHSPALEIAPQTQPLPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPQKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQDQAQGGSSNSYVVVVSSSPPTPPLTPSASVVSPTLSIQSSEIPENPSTKVSPTSPNASCFVTSSSSTPSSTTSVFASVLAPSTTPTTPSQSPSNSTCSFSNLMSNLARSENSNALMREPTSLSLSTPPYHSNNDPLHYTALPQPALSATALLQKAAQMGASNASLLRGLGLARTSSSFGKDEGVNINATTTLQWNGQVKQENHPVVDNLGLGLPCGSGSVPDVMMGPTTPFVGQPMTRDLLGLSVGGGATSRGGLSALLTSFGGNFDSPSEGGVHR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00300 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Gma06g00300 469 MobiDBLite consensus disorder prediction 1 41 - -
Gma06g00300 469 Gene3D Classic Zinc Finger 38 106 - -
Gma06g00300 469 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Gma06g00300 469 Gene3D Classic Zinc Finger 112 192 - -
Gma06g00300 469 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Gma06g00300 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 462 - -
Gma06g00300 469 SMART c2h2final6 99 129 IPR013087 -
Gma06g00300 469 SMART c2h2final6 134 154 IPR013087 -
Gma06g00300 469 SMART c2h2final6 58 80 IPR013087 -
Gma06g00300 469 MobiDBLite consensus disorder prediction 1 18 - -
Gma06g00300 469 Pfam Zinc-finger of C2H2 type 58 80 - -
Gma06g00300 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 11 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00300 Gma-Chr6 2612948 2615792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00300 29 454 IDZ Gene Family AT5G66730 50.630 2.78e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g00300 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00300 K25869 - gmx:100818095 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00300 06 2612948 2615792 Gma06g00300 06 2612948 2615792 ECH
Gma04g00315 04 2683944 2687186 Gma06g00300 06 2612948 2615792 GST